BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323209
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45310.1 | Symbols: | Cysteine proteinases superfamily prot... 922 0.0
> AT3G45310.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:16628384-16630521 REVERSE LENGTH=1445
Length=1445
Score = 922 bits (499), Expect = 0.0
Identities = 548/572 (96%), Gaps = 2/572 (0%)
Strand=Plus/Plus
Query 384 CACGACGGGAGCTCTTGAAGCAGCTTACCATCAAGCATTTGGAAAAGGAATATCTTTGTC 443
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CACAACTGGAGCTCTTGAAGCAGCTTACCATCAAGCATTTGGAAAAGGAATATCTTTGTC 614
Query 444 TGAGCAACAGCTTGTTGATTGTGCTGGAACTTTTAATAACTTTGGTTGTCATGGCGGACT 503
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 615 CGAGCAACAGCTTGTGGATTGTGCTGGTACTTTCAATAACTTTGGTTGTCATGGTGGACT 674
Query 504 TCCTTCTCAAGCCTTTGAATACATTAAATATAACGGTGGGCTCGATACAGAGGAGGCTTA 563
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 675 TCCTTCTCAAGCCTTTGAATACATTAAATACAACGGTGGGCTCGACACGGAGGAGGCTTA 734
Query 564 TCCTTACACGGGAAAAGACGGTGGCTGCAAATTTTCAGCGAAAAACATCGGTGTACAAGT 623
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TCCTTACACCGGAAAAGACGGTGGCTGCAAATTTTCAGCGAAAAACATCGGTGTACAAGT 794
Query 624 CCTTGACTCTGTTAACATTACCCTGGGTGCAGAAGATGAACTGAAGCATGCGGTCGGGTT 683
|| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 795 CCGTGACTCTGTCAACATTACCCTGGGTGCAGAAGATGAACTGAAGCACGCGGTCGGGTT 854
Query 684 GGTAAGGCCAGTGAGTGTGGCGTTTGAGGTTGTACATGAATTTC-GGTTTTACAAGAAGG 742
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 855 GGTAAGGCCAGTGAGTGTGGCGTTTGAGGTTGTACATGAA-TTCAGGTTTTATAAGAAGG 913
Query 743 GAGTTTTTACTAGTAATACTTGTGGAAACACTCCAATGGATGTAAACCATGCAGTGTTAG 802
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 914 GAGTTTTTACTAGCAATACATGTGGTAACACTCCAATGGATGTAAACCATGCAGTGTTAG 973
Query 803 CAGTTGGTTATGGAGTTGAAGACGACGTCCCGTATTGGCTTATAAAGAACTCATGGGGAG 862
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 974 CAGTTGGTTATGGAGTTGAAGACGACGTCCCGTACTGGCTTATAAAGAACTCATGGGGAG 1033
Query 863 GTGATTGGGGAGACAATGGCTATTTCAAGATGGAAATGGGAAAGAACATGTGTGGTGTTG 922
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1034 GTGAATGGGGAGACAATGGCTACTTCAAGATGGAAATGGGAAAGAACATGTGTGGTGTTG 1093
Query 923 CAACATGTTCATCGTATCCGGTTGTGGCCTGA 954
||||||||||||||||||||||||| ||||||
Sbjct 1094 CAACATGTTCATCGTATCCGGTTGTAGCCTGA 1125
Score = 510 bits (276), Expect = 8e-144
Identities = 333/361 (92%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTAAAACTAATCTTATCTTCATCAATCCT-TCTGATTTTCTTCGCGGCGGCTGC 59
|||||||| ||||||| | ||||||| |||||||| | ||||| |||| |||||||| ||
Sbjct 49 ATGTCTGTGAAACTAAACCTATCTTCCTCAATCCTAT-TGATTCTCTTTGCGGCGGCGGC 107
Query 60 GACTAAAGAGATCGGGTTCGATGAATCAAATCCAATCAAAATGGTCTCCGACAATCTCCA 119
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 108 GAGTAAAGAGATCGGATTCGATGAATCTAATCCAATCAAAATGGTCTCCGACAATCTCCA 167
Query 120 CGAGCTTGAAGACACCGTCGTTCAGATCCTAGGCCAGTCCCGTCATGTTCTCTCCTTTTC 179
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 168 TGAGCTTGAAGACACCGTCGTCCAGATCCTAGGACAGTCCCGTCATGTTCTATCCTTTTC 227
Query 180 TCGCTTCGCTCACCGGTATGGGAAGAAGTATCAGAGCGTGGAAGAGATGAAGTTACGATT 239
||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 228 TCGCTTCACTCACAGGTATGGGAAGAAGTATCAGAGTGTGGAGGAGATGAAGTTAAGATT 287
Query 240 CTCTGTTTTTAAAGAGAATCTTGATTTAATCAGATCCACTAATAAGAAAGATTTATCTTA 299
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 288 CTCTGTTTTTAAGGAGAATCTTGATTTAATCAGATCCACTAATAAGAAAGGCTTATCCTA 347
Query 300 TAAACTCTCTCTTAATCAGTTTGCTGATTTGACATGGCATGAGTTTCAAAGATATAAGct 359
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 348 TAAACTCTCTCTTAATCAGTTTGCTGACTTGACATGGCAAGAGTTTCAAAGATACAAGCT 407
Query 360 t 360
|
Sbjct 408 T 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5