BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323223
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 359 3e-98
AT3G21130.1 | Symbols: | F-box and associated interaction doma... 322 5e-87
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 359 bits (194), Expect = 3e-98
Identities = 703/933 (75%), Gaps = 98/933 (11%)
Strand=Plus/Plus
Query 32 ATCTTCCGGAAGATTTGCTAGTCGAGATTCTTTCT-AGAGTTCCGGC-GAAATCTCTAGT 89
|||||||||| |||||| | | ||||| || ||| || |||||||| | |||||| |
Sbjct 5 ATCTTCCGGAGGATTTGGTCCTGGAGATACTCTCTAAG-GTTCCGGCTG-TATCTCTGGC 62
Query 90 ACGATTACGATCAACATCG-AAAAGATGGAACGCTCTTGTAAAAGATGGGAGATTTGCTA 148
|||||| ||||| || | | | ||||||||||||||| || ||||| || |||||||
Sbjct 63 ACGATTTCGATCGAC-TTGCAGAAGATGGAACGCTCTGGTCGTCGATGGAAGCTTTGCTA 121
Query 149 AGAAGCACTATGCTAATAC--TCCAAAGCACTCCT-CTCTAGTTCTCATGGT-AACTAAT 204
||||||||||||| ||| ||||| ||| | | || ||||| | ||| | | | |
Sbjct 122 AGAAGCACTATGC--GTACGGTCCAAGGCAGT-ATCCTATAGTTATTATGTTGATC-GAG 177
Query 205 TTTAGGGTTTACTTAGTGAGCGTTGAT-TATCTCCATGG---TAA-AGT---TAC--TG- 253
||||||||||| ||||||| | | || |||||||||| ||| | | || ||
Sbjct 178 TTTAGGGTTTATTTAGTGA--G-T-ATAGATCTCCATGGAATTAACAATAACAACGGTGC 233
Query 254 -CC-TCTGCAAAGATAACAAGTCAATTCAACTTACAAGA---TC-ATCT--TTC--GA-A 302
|| ||||| ||| ||||| ||||||||| | || |||| || ||| ||| | |
Sbjct 234 CCCATCTGCGAAGCTAACAGGTCAATTCAGCCTAAAAGACCCTCTTTCTAATTCTTCAGA 293
Query 303 ACAAATCGATGTATGTAACGCCTATCATTCCGACGGTTTACTTG-TATGCAT-TACCAAA 360
| || | ||| || ||||||||| ||| | |||||| ||| ||| ||||| | |||||||
Sbjct 294 AGAAGTTGATATACGTAACGCCTTTCACTGCGACGGCTTA-TTGCTATGC-TGTACCAAA 351
Query 361 GACAATAGCCTT-GTTGTTTGGAATCCGTGTTTAGGGCAAACCAGGTGGATCCAAGCCAG 419
|||| || || |||||||||||||| |||| |||| |||||| |||||||||| ||||
Sbjct 352 GACAGGAG-ATTGGTTGTTTGGAATCCATGTTCAGGGGAAACCAAGTGGATCCAACCCAG 410
Query 420 AAACAGCTACAA-TAAAAATGAC-TACTATGCTCTCGGTTACGATGACAAATCCTCCTGT 477
||| |||||| || | ||| || ||||| || ||||||||| ||| ||||||||
Sbjct 411 AAATTCCTACAAGGAATCA-GACTTA-TATGCCCTAGGTTACGATAACAGATCCTCCTCC 468
Query 478 TACAAAATATTGAGGATGCATCGAGTTGTCGATGATATCACC-GTGGAAACTGAGTCCGA 536
|||||||| ||||||||||||| |||| | | | | | || | | | |||||||||
Sbjct 469 TACAAAATCTTGAGGATGCATCCCGTTG--G-T-A-A-C-CCATTTCACATTGAGTCCGA 521
Query 537 AGTCTATGACTTTGCTTCTAATTCGTGGAGG-GATATTGGT-TCGACTACCGAGTGGTTT 594
||||||||||||||||||| |||||||||| | | ||||| | ||||||||| |
Sbjct 522 AGTCTATGACTTTGCTTCTCATTCGTGGAGAAG-TGTTGGTGT-GACTACCGACTTCCAC 579
Query 595 ATACAA-CAACAT-AGGAGTCGTGGCATGTATGTCAAGGGAACTACTTACTGGCTTGCGT 652
|||||| | | || || ||| ||||||| ||||||||||||||||||||||| |||| |
Sbjct 580 ATACAAACGA-ATGAG-AGTTATGGCATGAATGTCAAGGGAACTACTTACTGGTTTGC-T 636
Query 653 -TGATGAGTGAAGA--GCCGC-CATTTGA---TCAT--TT-CTTACTAAGTTTTGATTTT 702
| | ||| |||| | | ||| ||| || | || |||||||||||||||||||
Sbjct 637 CT--T-AGTAAAGACTGGTGGTCATCTGACGATCGTCGTTTCTTACTAAGTTTTGATTTT 693
Query 703 TCAACAGAGAGATTTCAAAGTCTGTCTCTTCCATTGGATATTAATCATCAA-ACTCTTTT 761
|||| ||||||||||||| ||||| ||||||| |||| |||| ||| | | ||||
Sbjct 694 TCAAGAGAGAGATTTCAATGTCTGCCTCTTCCGGCGGATGTTAAAAATCTACA-TCTT-- 750
Query 762 AGGTGCGGTTTTATCAGTGACTAAAGAAGAGCAAAAACTTTGTATGTTAGCTAC-CTATG 820
| || ||||||||| ||||||| |||||||||| |||| |||||||| ||||| || ||
Sbjct 751 AC-TGTGGTTTTATCGGTGACTAGAGAAGAGCAACAACTATGTATGTTTGCTACTCT-TG 808
Query 821 GCTCTGATGA-GAGATTCAAATCAGATGTATG-GATAGCAACTAAGATGGAG-AG--TAC 875
|| ||| | | | || ||||| |||||||| | |||||||||||| ||| || |||
Sbjct 809 GCGCTGGTAATGT-ATACAAATTAGATGTATTCG-TAGCAACTAAGACAGAGGAGACTAC 866
Query 876 CGGAGC-CATGTCATGGAGCAATGTCTCGGTCG 907
|||| | || |||||| ||| || || ||||
Sbjct 867 GGGAGAAC-TGACATGGACCAA-GT-TCCGTCG 896
> AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104
Score = 322 bits (174), Expect = 5e-87
Identities = 703/940 (75%), Gaps = 110/940 (12%)
Strand=Plus/Plus
Query 14 AGAGGAGAAGCATAATATATCTTCCGGAAGATTTGCTAGTCGAGATTCTTTCTAGAGTTC 73
||| ||||| || | | |||||| |||| |||||| |||| ||||| || |||||||||
Sbjct 8 AGAAGAGAAACACAGTTTATCTTTCGGAGGATTTGATAGTGGAGATACTCTCTAGAGTTT 67
Query 74 CGGC-GAAATCTCTAGTACGATTACGATCAACATCGAAAAGATGGAACGCTCTTGTAAAA 132
|||| | |||| | | |||||||||| | ||||| ||| |||||||||||||||| ||
Sbjct 68 CGGCTG-TATCTTTGGCACGATTACGAACTACATCCAAACGATGGAACGCTCTTGTTAAG 126
Query 133 GATGGGAGATTTGCTAAGAAGCACTATGCTAATACTCCAAAGCACTCCTCTCTAGTTCTC 192
|| | |||| ||||||||||||||| |||| || |||||| ||| ||||| ||| ||
Sbjct 127 GACGAGAGACTTGCTAAGAAGCACTCTGCTTATGCTCCAAGGCA---GTCTCTGGTTATC 183
Query 193 ATGGTAACTAATTTTAGGGTTTACTTAGTGAGCGTTGATTATCTCC---ATGG---T--A 244
| | | | | ||| |||||||| ||| ||| || ||| ||||| |||| | |
Sbjct 184 ACGTTGATTGATTCCAGGGTTTATTTAATGAACG-TGA--GTCTCCAATATGGAATTGAA 240
Query 245 AA-GTT-ACTGC-CTCTGCAAAGATAACAAGTCAATTCAACTTACAAGATCATCTTTCGA 301
|| ||| | | | ||||||||| ||||| ||||||||| | || |||||| |||||| |
Sbjct 241 AAGGTTGA-T-CTATCTGCAAAGCTAACAGGTCAATTCAGCCTAAAAGATCCTCTTTC-A 297
Query 302 AA--C-----A--AA-TCGATGTATGTAACGCCTATCATTCCGACGGTTTACTT-GTATG 350
|| | | || | ||| || |||||| || ||| | |||||| ||| || ||||
Sbjct 298 AATTCTTTAGAGGAAGTTGATATACGTAACGTCTTTCACTGCGACGGCTTA-TTACTATG 356
Query 351 CATTACCAAAGACAATAGCCTT-GTTGTTTGGAATCCGTGTTTAGG-GCAAACCAGGTGG 408
|| |||||||||||||| || |||||||||||||| |||| ||| | |||| ||||||
Sbjct 357 CAGCACCAAAGACAATAG-ATTAGTTGTTTGGAATCCATGTTCAGGTG-AAACAAGGTGG 414
Query 409 ATCCAAGCC-AGAAACAGCTACAA--TAAAAATGACTA-CTATGCTCTCGGTTACGATGA 464
|||||| || |||| |||||| | | | ||| | ||||||| | ||||| ||| |
Sbjct 415 ATCCAA-CCTAGAAGTTCCTACAAGGT-ATCA-GAC-ATCTATGCTTTAGGTTATGATAA 470
Query 465 CAAATCCTCCTGTTACAAAATATTGAGGATGCATCGAGT-TGTCGA-TGATATCACC-GT 521
|| |||||| ||| ||||||| ||||||||| ||||| | || || | |||| || |
Sbjct 471 CACATCCTCATGTCACAAAATCTTGAGGATGGATCGA-TCTGAGGACCG-TATC-CCAAT 527
Query 522 GGAAACTGAGT-CCGAAGTCTATGACTTTGCTTCTAATTCGTGGAGGGAT-ATTGGT-TC 578
||||||||| || |||||||||||||| | ||||| |||||| | | | |||| |
Sbjct 528 TCAAACTGAGTACC-AAGTCTATGACTTTACCTCTAAATCGTGGCTAGTTGA-TGGTGT- 584
Query 579 GACTACCGA-G-TGGTTTATA-CAA-CA-----ACATAGGAGTCGTGGCATGTATGTCAA 629
| || || | | ||| ||| ||| | || | |||| |||||| ||| ||| ||
Sbjct 585 GGCT--GGAGGCTTGTTCATACCAAGTATTGGGAC-TCGGAGACGTGGCTTGTCTGTGAA 641
Query 630 GGGAACTACTTACTGGCTTGCGTTGATGAGTGAAGA--G-CCGCCATTTGATCAT-TTCT 685
||||| ||||||||||||||| | | | |||||| | |||||||||||| || ||||
Sbjct 642 GGGAAATACTTACTGGCTTGC--T-CTTACTGAAGACGGACCGCCATTTGAT-ATGTTCT 697
Query 686 TACTAAGTTTTGATTTTTCAACAGA-GAGATTTCAAAGTCTGTCTCTTCC-ATTGGATAT 743
|| || ||||||||||||| || || | |||||| | ||||||||||||| | || |
Sbjct 698 TATTATGTTTTGATTTTTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGA-CGG--A- 752
Query 744 TAATCATCAAACTCTTTTA-GGTGCGGT-TTTATCAGTGACTAAAGAAGAGCAAAAACTT 801
|| || | ||| | ||| | || || |||||||||||||| |||||||||| |||||
Sbjct 753 TACTCCTTGTACT-TATTATGATG-TGTCTTTATCAGTGACTAGAGAAGAGCAACAACTT 810
Query 802 TGTATGTTAGCTACCTATG-GCTCTGATGAGAGATTCAAATCAGATGTATGGATAGCAAC 860
|||||||| || | | | || || | | || | || | |||||||||||||
Sbjct 811 TGTATGTT---TA---A-GAG-TC--AT--G-G-CTC---TGAG-T-TATGGATAGCAAC 851
Query 861 TAAGATGGAGAGTACCGGAGCCATGTCATGGAGCAATGTC 900
|||||||||||||||||||||||| ||||||||||| |||
Sbjct 852 TAAGATGGAGAGTACCGGAGCCATTTCATGGAGCAA-GTC 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5