BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323241
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45760.1 | Symbols: | Nucleotidyltransferase family protein... 845 0.0
AT3G45750.1 | Symbols: | Nucleotidyltransferase family protein... 575 4e-163
> AT3G45760.1 | Symbols: | Nucleotidyltransferase family protein
| chr3:16801996-16804759 REVERSE LENGTH=1425
Length=1425
Score = 845 bits (457), Expect = 0.0
Identities = 576/632 (91%), Gaps = 13/632 (2%)
Strand=Plus/Plus
Query 594 GACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACACTATTTAAAGATGGAATCGACCC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 699 GACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACACTATTTAAAGATGGAATCGATCC 758
Query 654 TCCTAACGTTGAGAAAAGAACGCAAAATTTCTTAAATTGGGGACAGTGTAATCAAGAATC 713
||||| ||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 759 TCCTATCGTGGAGAAAAGAACACAAAAGTTCTTAAACTGGGGACAACGTAATCAAGAATC 818
Query 714 TCTTGGTAAACTGTTTGCAACtttttttATTAAGGTTGAGGATTTTACAGACGTGTCTA- 772
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 819 TCTTGGTAGACTGTTTGCAACTTTTTTTATTAAGGTTGAGGATTTTACAGACGTGGCTAG 878
Query 773 AAATTTTTGCAAGGGTGGTTAGTGACAAAGGAGCCGAAAAGATATACAGCTCCATAAACA 832
||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 879 AAATTTT-GCAAGGGTTTTTAGTGACTACGGAGCCGAAAAGATATACAGCTCCATAAACA 937
Query 833 AAACCGTAGATGACATCTTTGAATTCCTCAATGGCAAG-TTCGCTGGAGAACATCTCACA 891
||| |||||||| || || || ||||||||||||||| || ||||||||||||||||||
Sbjct 938 GAACAGTAGATGATATATTGGAGTTCCTCAATGGCAAGGTT-GCTGGAGAACATCTCACA 996
Query 892 CAAAAGTTGTTTAGCCAACAAGCTGTTGTGGAGCCT-TCTCCTCCTGTGTCGCCACAACA 950
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 997 CAAAAGTTGTTTAGCCAACAAACTGTTGTGGAGCCTAT-TCCTCCTGTGTCGCCACAACA 1055
Query 951 ACCTCATAACAAAAGAGTCTGCTTGGAAAACGGATACAAAGCTGTAAGAGGAACCGGTAA 1010
||||||||| |||||||||||||||||||| ||||||| ||||||| |||| | | || |
Sbjct 1056 ACCTCATAAGAAAAGAGTCTGCTTGGAAAAGGGATACAGAGCTGTAGGAGGGATCAGTCA 1115
Query 1011 CGGGAGAGAGGAGA-T-ATTCGAAAATCCTAGAGGAAAACGAAAGACGTATGCTGGAAGA 1068
||| |||||||||| | || |||| | |||||||||||||||| | || || ||||| |
Sbjct 1116 CGGAAGAGAGGAGACTCAT--GAAACTTCTAGAGGAAAACGAAAAAGGTCTGGTGGAA-A 1172
Query 1069 AACGGGAGCTGTAGGTTTAGTGGTGGTGAAGAACCAATGCCTGTGGGTCTGTGGCATGAC 1128
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1173 CT-GGG-GCTGTAGGTTTAGTGGTGGTGAAGAACCAATGCCTGTGGGTCTGTGGAATGAG 1230
Query 1129 TACAGTCGAAGTCTTGATATGCCAACACCACCACCACATTATGATAGACTTCTTTATAAG 1188
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1231 TACAGTCGAAGTCTTGATATGCCAACACCACCACCACATTATGATAAACTTCTTTATAAG 1290
Query 1189 AAAGTTCCTCTCAAGACTGTTGATCACATGTG 1220
||||||||||||||||||||||| | ||||||
Sbjct 1291 AAAGTTCCTCTCAAGACTGTTGAACTCATGTG 1322
Score = 785 bits (425), Expect = 0.0
Identities = 535/586 (91%), Gaps = 15/586 (3%)
Strand=Plus/Plus
Query 22 GCTGAGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCC 81
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 GCTGGGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCC 81
Query 82 ATAGCATCTAAAAGATATAACATTGATAGTTATGTCTTACTAGACCTTGATAATGTATTA 141
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 82 ATAGCATCTAAGAGATATAACATTGATAGTTATATCTTACTAGACCTTGATAAGGTATTA 141
Query 142 GATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGGAAGGAATTG 201
||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 GATGATGCCTACAGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGGAAGGAATTG 201
Query 202 GTGAAAAACCTCAATGCTATGGCTATAGATA--TTT--T---T--GAAGAGAGCAGACCG 252
|| |||||||||||||||||||||||||||| ||| | | ||||||||||| |||
Sbjct 202 GTCAAAAACCTCAATGCTATGGCTATAGATATTTTTGGTAAATCAGAAGAGAGCAGCCCG 261
Query 253 GTCCTTGAGGCATATGGGTCTTTCGTGATGGATACGTTTTCCCCGCAAAGGGATTTGGAT 312
||||||||||| ||||| ||||| | |||| ||||||||||| | |||| ||||||||||
Sbjct 262 GTCCTTGAGGCGTATGGCTCTTTTGCGATGAATACGTTTTCCTCACAAAAGGATTTGGAT 321
Query 313 GTATCTATTAACTTTGGTAGTGGAACATCTGAACTTTCTCGTGTAAAGAAGCTCGAAATT 372
||||||||||||||| |||| |||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 322 GTATCTATTAACTTTAGTAGCGGAACATCTGAATTTTATCGTGAAAAGAAGCTAGAAATT 381
Query 373 CTTGA-AAGATTTGCAACGAAGCTCCGCTCTTTGGAGGGGCAAGTGTTTGTTAGGAATGT 431
||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 382 CTT-ACAAGATTTGCAACGAAGCTCCGCTCTTTGGAGGGGCAAGGGTTTGTCAGGAATGT 440
Query 432 TGTACCTATCTTCAA-TGCTAGGGTGCCAATTGTCAAATTCTGTGATCAAAGGACTGGTA 490
|||||||||||| || ||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 441 TGTACCTATCTT-AAGTGCTAGGGTTCCAATTGTCAGATTCTGTGATCAAGGGACTGGTA 499
Query 491 TTGAATGTGATTTGGCTGTCGAAAGCAAAGACGGCATTTTAGTTTC-CAAGATCATTCGT 549
| |||||||||||| | || ||||||||||||||||||||| ||| || |||||||||
Sbjct 500 TCGAATGTGATTTGACAGTTGAAAGCAAAGACGGCATTTTAACTTCACA-GATCATTCGG 558
Query 550 ATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGCTTGTTGA 595
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 559 ATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGTTTGTTGA 604
> AT3G45750.1 | Symbols: | Nucleotidyltransferase family protein
| chr3:16793611-16797933 REVERSE LENGTH=2488
Length=2488
Score = 575 bits (311), Expect = 4e-163
Identities = 505/596 (85%), Gaps = 23/596 (4%)
Strand=Plus/Plus
Query 15 AAAGGTGGCTGAGGA-AAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACA 73
||| ||||||||||| ||| |||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 210 AAATGTGGCTGAGGATAAA-AATGTTTCGAGTAAAGTGATTCGAAAGAAGGTGAACAACA 268
Query 74 CTATGTCCATAGCATCT-AAAAGATATAACATTGATAGTTATGTCTTACTAGACCTTGAT 132
|| |||| |||||| || || |||||||| |||||||||||| ||||||| || ||||||
Sbjct 269 CTGTGTCAATAGCA-CTCAAGAGATATAAGATTGATAGTTATATCTTACTGGATCTTGAT 327
Query 133 AATGTATTAGATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGG 192
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 328 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGG 387
Query 193 AAGGAATTGGTGAAAAACCTCAATGCTATGGCTATAGATATTT-T--T--G----AAGAG 243
||||||||||| |||||||| ||| |||||||| ||||||||| | | | |||||
Sbjct 388 AAGGAATTGGTCAAAAACCTTAATACTATGGCTTTAGATATTTATGGTAAGTCTGAAGAG 447
Query 244 AGCAGACCGGTCCTTGAGGCATATGGGTCTTTCGTGATGGATACGTTTTCCCCGCAAAGG 303
||||| |||||||||||||| ||||||||||| |||||||||| || ||| | || ||
Sbjct 448 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTTGTGATGGATATGTATTCATCTCAGAGT 507
Query 304 GATTTGGATGTATCTATTAACTTTGGTAGTGGAACATCTGA-ACTTTCTCGTGTAAAGAA 362
||||| ||||| |||||||||||||||| |||||||||||| | || |||||| ||||||
Sbjct 508 GATTTAGATGTGTCTATTAACTTTGGTAATGGAACATCTGAGA-TTCCTCGTGAAAAGAA 566
Query 363 GCTCGAAATTCTTGAAAGATTTGC-AACGAAGCTCCGCTCTTTGGAGGG-GCAAGTGTTT 420
|||||| || ||| |||||||||| || ||||||||| ||| || |||| | ||| |
Sbjct 567 GCTCGAGATACTTAAAAGATTTGCTAA-GAAGCTCCGTTCTCTGCAGGGAG-AAGGGCAG 624
Query 421 GTTAGGAATGTTGTACCTATCTTCAATGCTAGGGTGCCAATTGTCAAATTCTGTGATCAA 480
|||| |||||||| | |||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 625 GTTAAGAATGTTGAATCTATCTTCTCTGCTAAAGTGCCAATTGTCAAATTCTCTGATCAA 684
Query 481 AGGACTGGTATTGAATGTGATTTGGCTGTCGAAAGCAAAGACGGCATTTTAGTTTC-CAA 539
|||||||| |||| ||||||||| | ||||||| ||||| ||||||||| ||| ||
Sbjct 685 GGGACTGGTGTTGAGTGTGATTTGTCAGTCGAAAATAAAGATGGCATTTTAAATTCACA- 743
Query 540 GATCATTCGTATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTG-CTTGTTG 594
|||| |||| || |||||||||||||||| |||||||| |||||||| || ||||
Sbjct 744 GATCGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTCT-GTTG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5