BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323258

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45990.1 | Symbols:  | Cofilin/tropomyosin-type actin-bindin...   383    6e-106


> AT3G45990.1 | Symbols:  | Cofilin/tropomyosin-type actin-binding 
protein family | chr3:16900778-16904136 REVERSE LENGTH=402
Length=402

 Score =  383 bits (207),  Expect = 6e-106
 Identities = 311/357 (87%), Gaps = 24/357 (7%)
 Strand=Plus/Plus

Query  1    ATGGTTGTGCATGATGATTGCATA-CTCAA-ATTCTTGGAACTGAAGGAGAGTCGAACAT  58
            |||||| |||||||||| |||| | || || ||||||||||||||||||||| |||||||
Sbjct  1    ATGGTTTTGCATGATGACTGCA-AGCT-AACATTCTTGGAACTGAAGGAGAGACGAACAT  58

Query  59   TCCGTTCCATAGTCTACAAGATAGAGGACAACATGCAAGTGATTATAGAG----A--A--  110
            |||||||||||||||||||||| ||||||||||||||||||||| |||||    |  |  
Sbjct  59   TCCGTTCCATAGTCTACAAGATTGAGGACAACATGCAAGTGATTGTAGAGAAACATCACT  118

Query  111  AC-------T---TGGTGAACGTGAACAATCATATGAGGACTTTGTAAACAGTCTTCCAG  160
            ||       |   ||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct  119  ACAAAAAAATGCATGGCGAACGTGAACAATCATATGAGGAGTTTGCAAACAGTCTTCCAG  178

Query  161  CTGATGAATGTCGATATGCCATTTTTGATTTCGAATTTATCCCATGGGAGAGAAAGATTT  220
            |||||||||| |||||||||||||| ||| |||||||  ||||| |||||||||||||||
Sbjct  179  CTGATGAATGCCGATATGCCATTTTGGATATCGAATTCGTCCCAGGGGAGAGAAAGATTT  238

Query  221  GCTTCATCGCGTGGTCTCCGGAAACTGCC-AGAATGAGAAAGAAGATGATTTACGCGAGC  279
            |||||||||||||||||||    |||||| || ||||||||||||||||||||| |||||
Sbjct  239  GCTTCATCGCGTGGTCTCCATCCACTGCCAAG-ATGAGAAAGAAGATGATTTACTCGAGC  297

Query  280  TCTAAGGATAGGTTCAAGAGAGAGCTAGATGGAATTCAAGTGGAGTTTCATGCAACT  336
             |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  298  ACTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAGTTTCACGCAACT  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5