BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323263
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr... 671 0.0
AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein |... 521 1e-147
> AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr3:16914539-16915759
FORWARD LENGTH=743
Length=743
Score = 671 bits (363), Expect = 0.0
Identities = 383/393 (97%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 121 ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGA 180
Query 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 240
Query 121 ATGCAAAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGCAAAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 300
Query 181 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGAT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGAT 360
Query 241 GTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGGT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGGT 420
Query 301 TACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAAT 360
| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 421 TTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAAC 480
Query 361 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393
|||||||||||||||||||||||||||||||||
Sbjct 481 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 513
> AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein
| chr5:24112200-24113617 REVERSE LENGTH=803
Length=803
Score = 521 bits (282), Expect = 1e-147
Identities = 357/394 (91%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 112 ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 171
Query 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120
|| |||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 172 GGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTC 231
Query 121 ATGCA-AAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAA 179
||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 232 ATGCAGAAA-CACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAA 290
Query 180 GATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGA 239
||| || || |||||||||||||| || ||||| ||||| || |||||||||||||||||
Sbjct 291 GATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGA 350
Query 240 TGTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGG 299
||| || ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 351 TGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGG 410
Query 300 TTACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAA 359
||||||||||| |||||||| || || || ||||| |||||||||||||||||||||||
Sbjct 411 GTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAA 470
Query 360 TGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393
|||||||||||| |||||||| ||||||||||||
Sbjct 471 TGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5