BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323263 Length=393 Score E Sequences producing significant alignments: (Bits) Value AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr... 671 0.0 AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein |... 521 1e-147 > AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr3:16914539-16915759 FORWARD LENGTH=743 Length=743 Score = 671 bits (363), Expect = 0.0 Identities = 383/393 (97%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 121 ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGA 180 Query 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 240 Query 121 ATGCAAAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATGCAAAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 300 Query 181 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGAT 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGAT 360 Query 241 GTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGGT 300 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 361 GTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGGT 420 Query 301 TACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAAT 360 | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 421 TTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAAC 480 Query 361 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393 ||||||||||||||||||||||||||||||||| Sbjct 481 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 513 > AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein | chr5:24112200-24113617 REVERSE LENGTH=803 Length=803 Score = 521 bits (282), Expect = 1e-147 Identities = 357/394 (91%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 112 ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 171 Query 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120 || |||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 172 GGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTC 231 Query 121 ATGCA-AAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAA 179 ||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct 232 ATGCAGAAA-CACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAA 290 Query 180 GATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGA 239 ||| || || |||||||||||||| || ||||| ||||| || ||||||||||||||||| Sbjct 291 GATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGA 350 Query 240 TGTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGG 299 ||| || ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| Sbjct 351 TGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGG 410 Query 300 TTACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAA 359 ||||||||||| |||||||| || || || ||||| ||||||||||||||||||||||| Sbjct 411 GTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAA 470 Query 360 TGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393 |||||||||||| |||||||| |||||||||||| Sbjct 471 TGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18548799381 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5