BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323273
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46220.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 3818 0.0
> AT3G46220.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2042 (InterPro:IPR018611).
| chr3:16979048-16984082 FORWARD LENGTH=2677
Length=2677
Score = 3818 bits (2067), Expect = 0.0
Identities = 2323/2443 (95%), Gaps = 32/2443 (1%)
Strand=Plus/Plus
Query 1 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTTGCTCAACAGGTGAAGTCA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 127 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTCGCTCAACAGGTGAAGTCA 186
Query 61 AGCGTGAGATTATCGGATCGAAATGTTGTCGAATTGGTTCAGAAGCTTCAGGAGCTTGGC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGCGTGAGATTGTCGGATCGAAATGTTGTCGAATTGGTTCAGAAGCTTCAGGAGCTTGGC 246
Query 121 GTTATAGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATACATCACTCAGGAGCAA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GTTATTGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATACATCACTCAGGAGCAA 306
Query 181 TTGAGGAATGAAATTACTCGTGAGATTAGTAAATTGGGACGTGTCTCTGTTATTGATCTG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 307 TTGAGGAATGAAATTACTCGTGAGATCAGTAAATTGGGACGTGTCTCTGTTATTGATCTG 366
Query 241 TCAGATACGATTGGGGTTGATTTGTATCATGTGGAGAAGCAAGCACAAGATGTGGTGTTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCAGATACGATTGGGGTTGATTTGTATCATGTGGAGAAGCAAGCACAAGATGTGGTGTTG 426
Query 301 AATGATCCAGGGTTAATGTTGGTTCAGGGAGAAATAATATCACAAAATTATTGGGATTCG 360
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 427 AATGATCCAGGGTTAATGTTAGTTCAGGGAGAAATAATATCACAAAGTTATTGGGATTCG 486
Query 361 ATTGCAGAAGAAATTAATGAGAGGCTTCAAGAATGCAGCCAAATTGCTGTGGCTGAACTT 420
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 487 ATTGCAGAAGAAATTAATGAGAGGCTTCAAGAGTGTAGCCAAATTGCTGTGGCTGAACTT 546
Query 421 GCTGGTCAGTTACAGGTTGGCTCTGAGTTAGTGCAATCGGTTTTGGAGCCTCGACTTGGA 480
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 547 GCTGGTCAGTTACAGGTTGGCTCTGAGTTGGTGCAATCGGTTTTAGAGCCTCGACTTGGA 606
Query 481 ACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGT 666
Query 541 GTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATTTTTGTTCCCTCCAACTTATCGGCA 600
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 667 GTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTTCCAATTTGTCGGCA 726
Query 601 TTGTGGGCACCATTGCAACAGTTGGTACAAGAAATGAATGGAGCCAGTGGAGTTGCTGTT 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 727 TTGTGGGCACCATTGCAACAGTTGGTACAAGAAACGAATGGAGCCAGTGGAGTTGCTGTT 786
Query 661 GAGAATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAGAATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGA 846
Query 721 TCACTACGTGCTGGAACCCATTGGACTCCTAGCGCTTTTGCAATTGCTCAAAAGGAGTGC 780
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 847 TCACTACGTGCTGGAACCCATTGGACTCCTAGTGCTTTTGCAACTGCTCAAAAGGAATGC 906
Query 781 GTAGACTCTTCTTTTTCACAGAATTCCTACATCTCCTATGAGAGCATGCAGAAGCTTGGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GTAGACTCTTCTTTTTCACAGAATTCCTACATCTCCTATGAGAGCATGCAGAAGCTTGGG 966
Query 841 ATTTCTCAAGCTGTGCAGTTCTTACAGTCTAGATATCCAGATGGTACACCTTTAGCTGCT 900
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 967 ATTTCTCAAGCTGTGCAGTTCTTACAGTCTAGATACCCAGATGGCACACCTTTAGCTGCT 1026
Query 901 GTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACCGAGGATGTTATTGAA 960
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1027 GTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACTGAGGATGCTATTGAA 1086
Query 961 CAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCATTCACTTCACAGGATGCA 1020
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1087 CAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCA 1146
Query 1021 AAAAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACTT 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 AACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACTT 1206
Query 1081 ATCTTGGGTGAATCCTATATCCTGAGCAGTGGGTTTATCAAGGGCATATATGATCAAATT 1140
|||||||| ||||||||| |||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1207 ATCTTGGGCGAATCCTATGTCCTAAGCAGTGGCTTTATCAAGGGAATATATGATCAAATT 1266
Query 1141 GAGAAAGAGGCAGAAGCTTTTAGCATCCAAGCTTCTACTGCTAGTTTGATAGATCCTTCA 1200
|||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1267 GAGAAAGAGGCAGATGCTTTTAGCATCCAAGCTTCTACTGCTACTTTGATACATCCTTCA 1326
Query 1201 AGCAAATCGTCAGAGTCGACAGAAAGCATACCTGCTAATACGGAGAAAGGGTCAAAGAAG 1260
||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1327 AGCAAGTCGTCAGAGTCGACAGAAAGCATACCTGCCAATACAGATAAAGGGTCAAAGAAG 1386
Query 1261 AAAAAAGGGAAGTCTGTCA-GCATGAAGGCAGCTACCGTTGAAACTGTTCCAGATGATGA 1319
|||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1387 AAAAAAGGAAAGTCTG-CAAGCACGAAGGCAGCTACCGTTGAAACTGTTCCAGATGATGA 1445
Query 1320 AGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGCAGGGATTCATCGTCATC 1379
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1446 AGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGAAGGGATTCATCTTCATC 1505
Query 1380 ACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCGGTTAAGGCCCAAGAAAATAA 1439
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 1506 ACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCAGTTAAGGCGCAAGAAAGTAA 1565
Query 1440 TAAC-TTCATTCCTCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTGCCTGAAT 1498
|||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1566 TAACATT-ATTCCGCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTACCTGAAT 1624
Query 1499 TTGAAGATGATGGTAC----G-GA------------G-A---A---CCCAGATTCGATTC 1534
|||||||||||||||| | || | | | ||||||||||||||
Sbjct 1625 TTGAAGATGATGGTACATCTGAGAACTTTTTCCTATGTACGGAGAACCCAGATTCGATTC 1684
Query 1535 TAAAGAATTTAGCTGATCATATGAAACCTATGCTCATTAATTCACTAAAGGAGAGAAGAA 1594
| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1685 TTAAGCATTTAGCTGATCATATGAAACCGATGCTCATTAATTCACTGAAGGAGAGAAGAA 1744
Query 1595 AGAAAATCTTCTCTGAAAATGCAGATAGATTGAGGCGCTTGATTGATGATCTGCAGAAAA 1654
||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1745 AGAAAATCTTCACAGAAAATGCAGATAGAATGAGGCGCTTGATTGATGATCTGCAGAAAA 1804
Query 1655 AGCTTGATGAGTCTTTCTTAAATATGCAGCTGTACGAAAAAGCTTTAGAGCTTTTTGAAG 1714
||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1805 AGCTTGATGAGTCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCTTTTCGAAG 1864
Query 1715 ATGACCAATCGAATT-CGGTTGTTTTACATAGGCATCTGCTGAGAACAACAGCAGCTACA 1773
|||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 ATGACCAATC-AACTGCAGTTGTTTTACATAGGCATCTGCTGAGAACAACAGCAGCTACA 1923
Query 1774 ATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAACTGAAGAATGGTACTGAA 1833
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1924 ATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAAATGAAGAATGGTACTGAA 1983
Query 1834 GTTGGAGAATCCAAAACGCAAGATCAAGT-TCTGCTTGATTCCTCTGAGAGAACGGCCCT 1892
|||| |||||||||||||||||||| ||| | |||||||||| ||||||||||| |||||
Sbjct 1984 GTTGAAGAATCCAAAACGCAAGATCTAGTGT-TGCTTGATTCTTCTGAGAGAACAGCCCT 2042
Query 1893 TGCTAAGAATCTCAACGGTTCACTTTCGAAAAAGGCTCTTGCATTAGTTGAGGCATTGGA 1952
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2043 TGCTAAGAATCTCAACGGTTCACTTTCAAAAAAGGCTCTTGCACTAGTTGAGGCATTGGA 2102
Query 1953 AGGAAAGCGTGTAGACACTTTCATGATCACCTTTAGAGACCTGGCAGAAGAAAGTGGATT 2012
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 2103 AGGAAAGCGTGTAGACACTTTCATGGTCACCTTCAGAGACCTGGCAGAAGAAAGTGGGTT 2162
Query 2013 AGTATTGAAAAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATACCGTAAGGA 2072
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2163 AGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGGA 2222
Query 2073 TTTGATATCTCAAGTTTCTACCGAATCAGACCCTGTTGCACTTCTTGCTAAAGTTGTCTC 2132
|||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2223 TTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCTAAAGTTGTCTC 2282
Query 2133 TCTACTTTTTATTAAGGTTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGCTGC 2192
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 CCTCCTTTTTATTAAGATTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGCTGC 2342
Query 2193 AGCTATTTCACACTTGAAGGATAAACTTGATGAATCTGCGTACAAGACTTTGACAGATTA 2252
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2343 GGCTATTTCACACTTGAAGGAAAAACTTGATGAATCTGCGTACAAGACTCTGACAGATTA 2402
Query 2253 CCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACATGA 2312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 CCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACATGA 2462
Query 2313 CTGCTCCGCAGACAGAATCTTGACCAAACGGGAATTTCTCGAGAGCCAGATGCCATTGCT 2372
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2463 TTGCTCCGCAGACAGAATCTTGACCAAACGGGAACTTCTCGAGAGCCAGATGCCATTGCT 2522
Query 2373 TAGAACCCTCGTCCTCGGCGACTCACAGCCACAACAATCCTAA 2415
||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 2523 TAGAACCCTCGTCCTTGGTGACTCGCAGCCACAACAATCCTAA 2565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5