BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323305
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46770.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1127 0.0
> AT3G46770.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:17223954-17225316 FORWARD LENGTH=941
Length=941
Score = 1127 bits (610), Expect = 0.0
Identities = 737/796 (93%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 34 GATACAGTTCAGAAGTTTTTCAGAGTTTACATACCAAATCAAACCGCAGATGACATGAAT 93
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 162 GATACAGTTCTGAAGTTTTTCAGAGTTTACATACCAAATCAAACCGCGGATGACATGAAT 221
Query 94 CTACCTTTGGTTTTGGACAAGATCTCAGGGAAGCCTCTTCCTCGGAAGGTGACTGTTAAA 153
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 222 CTACCTTTGGTTTCAGACAAGATCTCAGGGAAGCCTCTTCCTCGGAAGGTAACTGTTAAA 281
Query 154 AGCGTGTCTTCCGGGAACATTTGGAGGATGGAAATGAAAGCAAACGGTGACACCGTGTTT 213
|| ||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 282 AGTGTGTCCTCGGGGAACATTTGGAGGATGGAAATGAAAGCAAACGGTAACACAGTGTTT 341
Query 214 CTCCGAGACGGGTGGAAGAGAATCGTCAAGGACGAGAATGTGACAGAGACAATTTTCTTG 273
||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 342 CTCCGAGACGGGTGGAAGAAAATCGTCAAGGACGAGAATGTGACTGAGCCAATTTTCTTG 401
Query 274 GAGCTTGAGTTCGATGGTTCTGGTGTATTCCACTTTTGTGTGTATGAGTATGGTTCAATG 333
||| ||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||
Sbjct 402 GAGTTTGAGTTCGATGGTTATGGTGTGTTCCACTTTTGCGTGTACGAGTATGGTTCAATG 461
Query 334 TGTAAAAGGATGAGATCTCCAATGGAAAAAGAAGTGATAAAAGTGGACAGTACTGAAGAA 393
|||||||||||||||||||||||||||||||||||||| ||||| | | || |
Sbjct 462 TGTAAAAGGATGAGATCTCCAATGGAAAAAGAAGTGATTAAAGT-G---G-AC------A 510
Query 394 GAAATTGAAGAAGATGTGCTTGTGGATG-ATGAAGAGAGCACAAAAGGGCTTGAGGAGTC 452
| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 511 G----TGAAGAAGATGTGCTTGTGG-GGAATGAAGAGAGCACAAAAGGGCTTGAGGAGTC 565
Query 453 GCCAAGAAGAGGTGGTACAAGTAGAAGACGTGAGAATTTGAAGACTGACAGTCATAAGTT 512
|||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| |
Sbjct 566 GCCAAGAAGAGGTGGTACAAGTAGAAGACGTGCGAAACTGAAGACTAAGAGTCATAAGAT 625
Query 513 TTACGAACATCTAGGCAACAAACTAAATCCGTCGTTTCCGGTTGATATGACTCAGAGTAG 572
||| |||||||||| |||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 626 TTATGAACATCTAGACAACAAACTAAACCCGTCGTTTCCGGTTGATATGACTCAAAATAG 685
Query 573 AACGCGCATACCGTCTTTACTTATAAAGGACTACAACTTGACATTTCCAAACATGGTTAT 632
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 686 AACGCGCATACCGTCTTTACTTATAAAGGACTACAACTTGACATTTCCCAACATGGTTAT 745
Query 633 CGTGCGTGACAAGATTGGCATATTGAAGAGGAGAATCGCGGTTTGGAAGAACAAATCCGT 692
| |||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||
Sbjct 746 CATGCGTGACAAGATTGGCATATTGAAGAGAAGAATCGTGATTTGGAAGAACAGATCCGT 805
Query 693 GTATCTAAATGGAATCAGTAGTATCATCCGAAGGAATCATGTGAAGCCAGGTGATGAAAT 752
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 806 GTATCTAAATGGAATCGGTAGTATCATCCGAAGGAATCATGTGAAGCCAGGTAATGAAGT 865
Query 753 GGTATTCGAACTAAAGATGGTCAATGGTTATCACGGTTTGGTTCACGAAATCAAGGTCCA 812
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GGTATTCGAACTTAAGATGGTCAATGGTTATCACGGTTTGGTTCACGAAATCAAGGTCCA 925
Query 813 CATTATCAAAGCCTGA 828
||||||||| ||||||
Sbjct 926 CATTATCAAGGCCTGA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5