BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323331 Length=1260 Score E Sequences producing significant alignments: (Bits) Value AT3G47030.1 | Symbols: | F-box and associated interaction doma... 706 0.0 > AT3G47030.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:17322119-17323545 FORWARD LENGTH=1427 Length=1427 Score = 706 bits (382), Expect = 0.0 Identities = 723/880 (82%), Gaps = 53/880 (6%) Strand=Plus/Plus Query 396 CTCTCGTATATCTGCTTATTACCAGATGCATTTCCCTAAAGATT-TGGGTTCTTCAGAC- 453 ||||| ||||||||| |||||||||||||||||||||||| || ||||| |||||| | Sbjct 409 CTCTCCTATATCTGCCCATTACCAGATGCATTTCCCTAAAG-TTCTGGGTGCTTCAG-CA 466 Query 454 CAGGTTTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTAAG-AAGCCGATGATATG 512 |||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| | Sbjct 467 AAGGTGTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTA-GTAAGACGATGATTTT 525 Query 513 TAACCCTAGCACAGGAGAGTCAAAGTACATTTCTTTACCAAGTGCGAAAACAAAGAGGAT 572 ||||||||||||| |||||||||||| |||||| || || |||| |||| Sbjct 526 TAACCCTAGCACAAGAGAGTCAAAGTTCATTTCA--AC-AA---CGAA------GAGG-- 571 Query 573 GCTTACCGTGAACA---CTTCATTTGTATATGATCCTATCGACAAACTATTCAAGGTATT 629 | || |||||| | ||||||||| ||||||||||||||||| |||||||||||||| Sbjct 572 G-TTGGCGTGAAGAGTACTTCATTTGGGTATGATCCTATCGACAAGCTATTCAAGGTATT 630 Query 630 GTGCATGTCTGATGATTGTGTGAGTCGAGTTTCAACATTAGGGACGGAAGAAGCT-ACCT 688 || |||||| ||||||| |||| ||||||||||||||||||| ||||||| || | || | Sbjct 631 GTCCATGTCCGATGATTTTGTGTGTCGAGTTTCAACATTAGGAACGGAAGTAG-TGACTT 689 Query 689 GGAGAACAGTCGAATGTTTGATACCCCATCTACC-TTTACGTAAAGAGATGTTCATGGAT 747 ||||||| |||||||||| | ||||||||| ||| ||||| || ||||| | ||||||| Sbjct 690 GGAGAACGGTCGAATGTTCGGTACCCCATC-ACCCTTTACATAGTGAGATATGCATGGAT 748 Query 748 GGGGTATTGTACTATTTAGCTCTGCGCCTGGACCATGAAACTTCAACACCTTATATGGTA 807 ||||||||||| ||||||||| ||| ||| | |||||||| ||| ||||||||||||| Sbjct 749 GGGGTATTGTATTATTTAGCTAGGCGTGTGGGCGATGAAACTCCAAAACCTTATATGGTA 808 Query 808 GTAGCCTTTGATGTTAGATTGGAGAGATTCAAGTGTCTACCTGTGAATCGGAGTTATATA 867 | ||||||||| |||||||||||||||||||||| |||||| || ||| || | || | Sbjct 809 GCAGCCTTTGAAGTTAGATTGGAGAGATTCAAGTTTCTACCAATGGATCTCAGATGTA-A 867 Query 868 A-ACATTGCGT-GTTCAGCACTCATAAAGTACCAAGGTAAGTTGGCCGTAGTATGGCTAG 925 | |||||| || |||||||| ||||| | ||| |||||||||||||||||||||||||| Sbjct 868 ACACATTG-GTTGTTCAGCAGTCATAGATTACAAAGGTAAGTTGGCCGTAGTATGGCTAA 926 Query 926 ATG-GTAA--TG-CTATTCAACAACATCA-ACAA--TTG-GAGCTGTGTGTTCTAAATGA 977 ||| | | || | || |||| ||| || | || || |||||| ||||||||||||| Sbjct 927 ATGTGGATCGTGACAAT-CAACGACA-CATAGAAAGTTTTGAGCTGCGTGTTCTAAATGA 984 Query 978 TGGTGATGAAGTGGCATGGTCGGGTATTATATATGAATTGCCATATTTTTGGTATAATCT 1037 || |||||||||| |||||| ||||| || ||||||||| ||| |||| ||||||| Sbjct 985 TGTTGATGAAGTGAAATGGTCTCAAATTATTTACGAATTGCCAAATTATTGGAATAATCT 1044 Query 1038 AGCTGCGGATACCTACGTATACATTGTCGGGACGACTACTGCAGGTGAAATTGTGATGGC 1097 | ||||||||| | |||||| |||||| |||| ||||| |||||||||||||||| |||| Sbjct 1045 ACCTGCGGATATCGACGTATCCATTGTTGGGATGACTAGTGCAGGTGAAATTGTGTTGGC 1104 Query 1098 GACAAGCCATCCACGGGAACCTTTCTACATCATCTACTTCAGTACCGTGACTCATACTAT 1157 |||||||||| |||| | |||||||||||| |||||| |||||||||||||| | |||| Sbjct 1105 GACAAGCCATATACGGCATCCTTTCTACATCTTCTACTACAGTACCGTGACTCTTGCTAT 1164 Query 1158 -GATA-AGAGTT-GAAATCGAATTCGGAATTGTAGCTTTGAAGCCT---CACTGCTCAAA 1211 | || | | || ||| |||| |||||||||| |||| | || || |||||||||| Sbjct 1165 AG-TACA-ACTTCGAA-TCGATTTCGGAATTGAAGCTCCGGAGGCTAATCACTGCTCAAC 1221 Query 1212 GATTTCGACGATTT-TAAACCATGTAGAGGATGTCGAGCT 1250 ||| ||||| |||| |||||||||| ||| |||| ||||| Sbjct 1222 GATGTCGAC-ATTTGTAAACCATGTGGAGAATGTAGAGCT 1260 Score = 344 bits (186), Expect = 1e-93 Identities = 288/336 (86%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 1 ATGTTTGGGAT-TCTAGGGTTTAGCGCCGCCATGGGAAAACGGCAGAAGCAGCAAGTCAC 59 |||| |||||| | ||||||| ||||||| |||||||||||||| ||||||||||||||| Sbjct 53 ATGTCTGGGATGT-TAGGGTTAAGCGCCGTCATGGGAAAACGGCCGAAGCAGCAAGTCAC 111 Query 60 CGCCCGCCCAAGCAACTCCCCAAGAG-AAAACTCGAAGGAGGTGCCA-ATTGATCTCTTG 117 |||||| ||||| || | |||| || ||||| || ||||| | ||| | |||||||||| Sbjct 112 CGCCCGTCCAAGGAAGTGTCCAATAGAAAAAC-CGGAGGAGATACCAGA-TGATCTCTTG 169 Query 118 ATTGACATCTTCACAAGATT-ACCAGTGGAAGACGTTGCGAGGTGTCGTTGCGTGTCGAA 176 ||||| | ||| ||||||| ||| | ||||||||||| |||||||||||| |||||| Sbjct 170 ATTGATGTTTTCTCAAGATTGTCCA-TTGAAGACGTTGCAAGGTGTCGTTGCCTGTCGAG 228 Query 177 GCTTTGGTCTTCCATACTACGTCGTCGAGATTTCACCCAACTGTTCCTCAAAATCTCATC 236 | |||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||| Sbjct 229 GTTTTGGTCTTCCATACTACGTCGTCGATATTTCACGGAACTGTTCCACAAAATGTCATC 288 Query 237 GACTCGGCCTCGTATACTATTCACCTTCCTTTACAACGGGAGGCGACTCTTTTACTCCAT 296 ||| |||||||||||||||||||||||||||||| | || | |||||||||||||||||| Sbjct 289 GACCCGGCCTCGTATACTATTCACCTTCCTTTACTATGGTAAGCGACTCTTTTACTCCAT 348 Query 297 ACCTCAAGATCTAGATCCAGACCGCAACAACTACTC 332 |||||||||||||| || | ||||| ||||||| Sbjct 349 GCCTCAAGATCTAGACCCC-A--GCAACCACTACTC 381 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61947472530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5