BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323331
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47030.1 | Symbols: | F-box and associated interaction doma... 706 0.0
> AT3G47030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17322119-17323545 FORWARD LENGTH=1427
Length=1427
Score = 706 bits (382), Expect = 0.0
Identities = 723/880 (82%), Gaps = 53/880 (6%)
Strand=Plus/Plus
Query 396 CTCTCGTATATCTGCTTATTACCAGATGCATTTCCCTAAAGATT-TGGGTTCTTCAGAC- 453
||||| ||||||||| |||||||||||||||||||||||| || ||||| |||||| |
Sbjct 409 CTCTCCTATATCTGCCCATTACCAGATGCATTTCCCTAAAG-TTCTGGGTGCTTCAG-CA 466
Query 454 CAGGTTTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTAAG-AAGCCGATGATATG 512
|||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 467 AAGGTGTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTA-GTAAGACGATGATTTT 525
Query 513 TAACCCTAGCACAGGAGAGTCAAAGTACATTTCTTTACCAAGTGCGAAAACAAAGAGGAT 572
||||||||||||| |||||||||||| |||||| || || |||| ||||
Sbjct 526 TAACCCTAGCACAAGAGAGTCAAAGTTCATTTCA--AC-AA---CGAA------GAGG-- 571
Query 573 GCTTACCGTGAACA---CTTCATTTGTATATGATCCTATCGACAAACTATTCAAGGTATT 629
| || |||||| | ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 572 G-TTGGCGTGAAGAGTACTTCATTTGGGTATGATCCTATCGACAAGCTATTCAAGGTATT 630
Query 630 GTGCATGTCTGATGATTGTGTGAGTCGAGTTTCAACATTAGGGACGGAAGAAGCT-ACCT 688
|| |||||| ||||||| |||| ||||||||||||||||||| ||||||| || | || |
Sbjct 631 GTCCATGTCCGATGATTTTGTGTGTCGAGTTTCAACATTAGGAACGGAAGTAG-TGACTT 689
Query 689 GGAGAACAGTCGAATGTTTGATACCCCATCTACC-TTTACGTAAAGAGATGTTCATGGAT 747
||||||| |||||||||| | ||||||||| ||| ||||| || ||||| | |||||||
Sbjct 690 GGAGAACGGTCGAATGTTCGGTACCCCATC-ACCCTTTACATAGTGAGATATGCATGGAT 748
Query 748 GGGGTATTGTACTATTTAGCTCTGCGCCTGGACCATGAAACTTCAACACCTTATATGGTA 807
||||||||||| ||||||||| ||| ||| | |||||||| ||| |||||||||||||
Sbjct 749 GGGGTATTGTATTATTTAGCTAGGCGTGTGGGCGATGAAACTCCAAAACCTTATATGGTA 808
Query 808 GTAGCCTTTGATGTTAGATTGGAGAGATTCAAGTGTCTACCTGTGAATCGGAGTTATATA 867
| ||||||||| |||||||||||||||||||||| |||||| || ||| || | || |
Sbjct 809 GCAGCCTTTGAAGTTAGATTGGAGAGATTCAAGTTTCTACCAATGGATCTCAGATGTA-A 867
Query 868 A-ACATTGCGT-GTTCAGCACTCATAAAGTACCAAGGTAAGTTGGCCGTAGTATGGCTAG 925
| |||||| || |||||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct 868 ACACATTG-GTTGTTCAGCAGTCATAGATTACAAAGGTAAGTTGGCCGTAGTATGGCTAA 926
Query 926 ATG-GTAA--TG-CTATTCAACAACATCA-ACAA--TTG-GAGCTGTGTGTTCTAAATGA 977
||| | | || | || |||| ||| || | || || |||||| |||||||||||||
Sbjct 927 ATGTGGATCGTGACAAT-CAACGACA-CATAGAAAGTTTTGAGCTGCGTGTTCTAAATGA 984
Query 978 TGGTGATGAAGTGGCATGGTCGGGTATTATATATGAATTGCCATATTTTTGGTATAATCT 1037
|| |||||||||| |||||| ||||| || ||||||||| ||| |||| |||||||
Sbjct 985 TGTTGATGAAGTGAAATGGTCTCAAATTATTTACGAATTGCCAAATTATTGGAATAATCT 1044
Query 1038 AGCTGCGGATACCTACGTATACATTGTCGGGACGACTACTGCAGGTGAAATTGTGATGGC 1097
| ||||||||| | |||||| |||||| |||| ||||| |||||||||||||||| ||||
Sbjct 1045 ACCTGCGGATATCGACGTATCCATTGTTGGGATGACTAGTGCAGGTGAAATTGTGTTGGC 1104
Query 1098 GACAAGCCATCCACGGGAACCTTTCTACATCATCTACTTCAGTACCGTGACTCATACTAT 1157
|||||||||| |||| | |||||||||||| |||||| |||||||||||||| | ||||
Sbjct 1105 GACAAGCCATATACGGCATCCTTTCTACATCTTCTACTACAGTACCGTGACTCTTGCTAT 1164
Query 1158 -GATA-AGAGTT-GAAATCGAATTCGGAATTGTAGCTTTGAAGCCT---CACTGCTCAAA 1211
| || | | || ||| |||| |||||||||| |||| | || || ||||||||||
Sbjct 1165 AG-TACA-ACTTCGAA-TCGATTTCGGAATTGAAGCTCCGGAGGCTAATCACTGCTCAAC 1221
Query 1212 GATTTCGACGATTT-TAAACCATGTAGAGGATGTCGAGCT 1250
||| ||||| |||| |||||||||| ||| |||| |||||
Sbjct 1222 GATGTCGAC-ATTTGTAAACCATGTGGAGAATGTAGAGCT 1260
Score = 344 bits (186), Expect = 1e-93
Identities = 288/336 (86%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 1 ATGTTTGGGAT-TCTAGGGTTTAGCGCCGCCATGGGAAAACGGCAGAAGCAGCAAGTCAC 59
|||| |||||| | ||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 53 ATGTCTGGGATGT-TAGGGTTAAGCGCCGTCATGGGAAAACGGCCGAAGCAGCAAGTCAC 111
Query 60 CGCCCGCCCAAGCAACTCCCCAAGAG-AAAACTCGAAGGAGGTGCCA-ATTGATCTCTTG 117
|||||| ||||| || | |||| || ||||| || ||||| | ||| | ||||||||||
Sbjct 112 CGCCCGTCCAAGGAAGTGTCCAATAGAAAAAC-CGGAGGAGATACCAGA-TGATCTCTTG 169
Query 118 ATTGACATCTTCACAAGATT-ACCAGTGGAAGACGTTGCGAGGTGTCGTTGCGTGTCGAA 176
||||| | ||| ||||||| ||| | ||||||||||| |||||||||||| ||||||
Sbjct 170 ATTGATGTTTTCTCAAGATTGTCCA-TTGAAGACGTTGCAAGGTGTCGTTGCCTGTCGAG 228
Query 177 GCTTTGGTCTTCCATACTACGTCGTCGAGATTTCACCCAACTGTTCCTCAAAATCTCATC 236
| |||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||
Sbjct 229 GTTTTGGTCTTCCATACTACGTCGTCGATATTTCACGGAACTGTTCCACAAAATGTCATC 288
Query 237 GACTCGGCCTCGTATACTATTCACCTTCCTTTACAACGGGAGGCGACTCTTTTACTCCAT 296
||| |||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct 289 GACCCGGCCTCGTATACTATTCACCTTCCTTTACTATGGTAAGCGACTCTTTTACTCCAT 348
Query 297 ACCTCAAGATCTAGATCCAGACCGCAACAACTACTC 332
|||||||||||||| || | ||||| |||||||
Sbjct 349 GCCTCAAGATCTAGACCCC-A--GCAACCACTACTC 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5