BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323341
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47150.1 | Symbols: | F-box and associated interaction doma... 1242 0.0
AT3G47130.1 | Symbols: | F-box associated ubiquitination effec... 335 6e-91
> AT3G47150.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17358591-17359765 FORWARD LENGTH=1083
Length=1083
Score = 1242 bits (672), Expect = 0.0
Identities = 973/1108 (88%), Gaps = 62/1108 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTTGGTCCGAATACGACACCGATTTACATTCCTCTCGACCTCCAGATCAACATA 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1 ATGAAATTTGGTCCGAATACGACACAGATTTACATTCCTCTCGACCTCCAGATTAATATA 60
Query 61 CTCTTAAGATTGCATGTGAAGTCTTTATTGAGATTTCAATGTGTCTCCAAGCTTTGGTAT 120
||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 61 CTCTTAAGATTACCTGTCAAGTCTTTATTGAGATTTCGATGTGTCTCCAAGCTTTGGTGT 120
Query 121 TCTATTATCACCAGCCACGATTTTGGAAACCGTCACTTTGATATTACATCTTCCTCAGCT 180
|||||||||||||||||||||||| |||||||||||||| |||| || ||||| ||||||
Sbjct 121 TCTATTATCACCAGCCACGATTTTCGAAACCGTCACTTTAATATCACTTCTTCTTCAGCT 180
Query 181 GCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTGAC--AGAAACGAGC-TCACGTTAGTC 237
|||||||||||||||||||||||||||||||| || ||||| ||| || | ||||
Sbjct 181 CCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTTACGGAGAAA--AGCTTC-TGCTAGTT 237
Query 238 TCGTCACCTAACCCAAACACATCTTCCTCTTCCCCTTCTTCATGTTGTGTACCTTACAAA 297
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||
Sbjct 238 TCGTCGCCTAACCCAAACGTATCTTCCTCTTCCACTTCTTCATGTTGTGTACCCTATAAA 297
Query 298 GATCTGAGGCTACTC-AACATTAATGGACGAAAGGTGTATAACGCAGTTCGGGGATTGAT 356
|||||||| | || || || |||||||||||||| ||||| || ||| |||||||||
Sbjct 298 GATCTGAGTAAAGTCGAA-ATAAATGGACGAAAGGTTTATAATGCGGTTTGGGGATTGAC 356
Query 357 TTGCTTTGAAAGTAGATTAAAGGTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGCTTTGAAAGTAGATTAAAGGTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATAT 416
Query 417 TTTTCCCCGAGTCAAACTGAAAAGAG-ATCCAGACACTTTTCCATGCATCATGTACTTTC 475
||||||| | ||||| | |||| | ||||||||| |||||||||||||||||||||||
Sbjct 417 GTTTCCCCAAATCAAATTCAAAA-ATTATCCAGACATTTTTCCATGCATCATGTACTTTC 475
Query 476 TTGGGTACGATCCTATTGGAGATAAATATAAAGTGCTGGCCATTGATAATTTGCCTTGGA 535
|||||||||||| ||||| |||| |||| |||||||| |||||||||||||| |||||||
Sbjct 476 TTGGGTACGATCGTATTGAAGATCAATACAAAGTGCTCGCCATTGATAATTTACCTTGGA 535
Query 536 GATTGGAGTACAA-G--------AT--T--G----T-G-G-A----CAAGGGTTCCCCCA 571
||||||||||||| | || | | | | | | ||||||||| || |
Sbjct 536 GATTGGAGTACAAAGTTGTGCCTATACTACGGGCCTCGAGGAAGGACAAGGGTTCTCCAA 595
Query 572 ATA-ATTCTATAATTGTGAGTTTCGATGTTAGGTCTGAAACGTACAAAATCTCCAATGTA 630
||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 596 ATATAT-CTATAATTGTGAGTTTTGATGTTAGGTCTGAAACGTACAAAAACTCCAATGTA 654
Query 631 CCAAGCAAACTTCTACAAATCGACGA-TTCTGATAATTTTTGGACTGCTAATTGCAATTG 689
|||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 655 CCAAGCAAACTTCTACCAATGGAC-ACTTCTGATAATTTTTGGACTGCTAATTGCAATTG 713
Query 690 GTTTATTGGGGATAAAACTCTGATCAACTACAGCGGTAAGATTGGTGTGGTTGAGAAACC 749
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 714 TTTTATTGGGGATAAAACTCTGATCAACTACAACGGTAAAATTGGTGTGGTTGAGAAACC 773
Query 750 TCGACATGGTATATTTCGAATGTGGGTTGTAGAAGATGCTGAGAAAGAGGAATGGTCTAT 809
|| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TCAACATGGTAGATTTCGAATGTGGGTTGTTGAAGATGCTGAGAAAGAGGAATGGTCTAT 833
Query 810 GAACACTTTTTATTTGCCACAATCTGCTGCTGGCCTTGACTTCAAAGTCATGGATACCTT 869
|||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||||
Sbjct 834 GAACACTTTTTATTTGCCCCAATCTGCTTCTGGCCTTGACTTCAAGGTCATGAATACCTT 893
Query 870 TTATACCGGCGAGATTTGTCTGGTTACAGAAAAAATATCTGATCCGTTTTGTCTCTTCTA 929
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTATACCGGCGAGATCTGTCTAGTTACAGAAAAAATATCTGATCCGTTTTGTCTCTTCTA 953
Query 930 TTACAATTTGAAGACGAATAGCATGAGAAGTGTCGCA-ATTAAAGGACTAC--C-TATTT 985
||||||||||||||| |||||||||||||||||| | || || ||||||| | |||
Sbjct 954 TTACAATTTGAAGACAAATAGCATGAGAAGTGTCACGTATGAA-GGACTACTACATATGG 1012
Query 986 CCGA-GTTTAAGCAAAG-GTTGCAATTCCACAGCCTTTCTGTGACTGTTTCAGATCATTA 1043
|| | |||||||||| | |||||||||| | | | || | | || |||||||
Sbjct 1013 CC-ACGTTTAAGCAA-GCGTTGCAATTC-A--G--T----GT-A-T----CATATCATTA 1055
Query 1044 TGAGAGCTTGGTGTCCTTAGAAACTTGA 1071
||||||||||||||||||||||||||||
Sbjct 1056 TGAGAGCTTGGTGTCCTTAGAAACTTGA 1083
> AT3G47130.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:17353714-17354851 FORWARD LENGTH=1083
Length=1083
Score = 335 bits (181), Expect = 6e-91
Identities = 304/360 (84%), Gaps = 22/360 (6%)
Strand=Plus/Plus
Query 574 AATTCTATAATTGTGAGTTTCGATGTTAGGTC-TGAAACGTACAAAATC-TCCAATGTAC 631
|||||| ||||||||||||||||||||||| | |||||||| ||||||| | ||||||||
Sbjct 721 AATTCTGTAATTGTGAGTTTCGATGTTAGG-CTTGAAACGTTCAAAATCAT-CAATGTAC 778
Query 632 CAAGCAAACTTCTACAAATCGACGATTCTGATAATTTTTGGAC-TGCT-A-A-TTGCAAT 687
|||||||| |||||| ||| | | || ||| ||| | ||| | |||| | | || |
Sbjct 779 CAAGCAAAGTTCTACCAAT-G--GGTTATGAAAATATGTGG-CTTGCTGAGAGGTG-GA- 832
Query 688 TGGTTTATTGGGGATAAAACTCTGATCAACTACAGCGGTAAGATTGGTGTGGTTGAGAAA 747
|| | || |||||||||||||||||||||| || || || ||||||||||||||
Sbjct 833 -GGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGGTGTGGTTGAGAAT 891
Query 748 CCTCGACATGGTA-TATTTCGAATGTGGGTTGTAGAAGATGCTGAGAAAGAGGAATGGTC 806
|||| || |||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 892 GCTCGTCAAGGTAGT-TTTCGAATGTGGGTTGTGGAAGATGCTGAGAAAGAGGAATGGTC 950
Query 807 TATGAACACTTTTTATTTGCCACAATCTGCTGCTGGCCTTGACTTCAA-AGTCATGGATA 865
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 951 TATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAACA-TCATGGATA 1009
Query 866 CCTTTTATACCGGCGAGATTTGTCTGGTTACAGAAAAAATA-TCTGATCCGTTTT-GTCT 923
|||||||||||||||||||||||| |||| | |||| ||| || ||||| |||| ||||
Sbjct 1010 CCTTTTATACCGGCGAGATTTGTCAGGTTCC-GAAAGAATTGTCAGATCCTTTTTCGTCT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5