BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323349
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47360.1 | Symbols: ATHSD3, HSD3 | hydroxysteroid dehydrogen... 1480 0.0
AT3G47350.2 | Symbols: ATHSD2, HSD2 | hydroxysteroid dehydrogen... 904 0.0
> AT3G47360.1 | Symbols: ATHSD3, HSD3 | hydroxysteroid dehydrogenase
3 | chr3:17451112-17452843 FORWARD LENGTH=930
Length=930
Score = 1480 bits (801), Expect = 0.0
Identities = 890/933 (95%), Gaps = 6/933 (1%)
Strand=Plus/Plus
Query 1 ATGGATATGCTTACCACCATTCTCAATCTTCTTCTACCTCCTCTTACCATCAGT-TTCCT 59
|||||||| |||||||||||||||||||||||||| ||||||||||| |||| | || ||
Sbjct 1 ATGGATATACTTACCACCATTCTCAATCTTCTTCTTCCTCCTCTTACTATCA-TCTTTCT 59
Query 60 -TGTCTTCTTTTACCCATTTTATGTTTTGATCAAACTTGTGCTTTGTCTTCATAAGTACC 118
| || | ||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 60 CT-TCCTGTTTTACCCATTTTATCTTTTGATCAAACTTGTGCTTTGTCTTCGTAAGAACC 118
Query 119 TTCACTTCGAAAACGTAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 TTCACTTCGAAAACGTAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCTGGCATCG 178
Query 179 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGAGCATGTGGCATACGAATACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
Query 239 GAAGGGATCGTCTAGAGATTGTAGCTGAAACTTCACGTCAATTAGGATCTGGTAATGTCA 298
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 239 GAAGGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGTAATGTCA 298
Query 299 TCACCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
Query 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAACAATGCTGGTATATTTCAAACTGTTC 418
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAATAATGCTGGTGTATTTCAAACTGTTC 418
Query 419 TTTTCGAAGATTTCACTCAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGGG 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTTCGAAGATTTCACACAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGGG 478
Query 479 GCACAACATACATCACTTATTTCGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATCG 538
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 GTACAACATACATCACCTATTTTGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATCG 538
Query 539 TCGCGATTACATCTGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATATATGCAGCAA 598
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TCGCGATTACATCGGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATCTATGCAGCAA 598
Query 599 GCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCGGATATCA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 GCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCTGATATCA 658
Query 659 AAATAACAATTGTTCTCCCAGGAGTTGTATCAACAGATATGACCACACCTCACTGTATGG 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 659 AAATAACAATTGTTCTCCCAGGAGTTGTATCAACAGATATGACCACTCCTCACTGTATAG 718
Query 719 AAAAGTATGGTTCAGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAAGCAATCT 778
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 AGAAGTATGGTTCGGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAGGCAATCT 778
Query 779 TCAAAGGTATTGGCAGAGGAGATG-CATATATAGAAGAACCATCTTGGATGAAATGGTTG 837
||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||
Sbjct 779 TCAGAGGTATTGGCAGAGGAGA-GACATACATAGAAGAACCATCTTGGATGAAATGGCTG 837
Query 838 TTTATAATGAAAAATGTATGTCCTGAAATCGTTGATTACGGTCTCAACTTTTTATTTGTT 897
||||||||||||||||||||||| ||||||||||||||||| || |||| | ||||||||
Sbjct 838 TTTATAATGAAAAATGTATGTCCCGAAATCGTTGATTACGGACTTAACTATCTATTTGTT 897
Query 898 AGTTATCTCAAACCTTATTTCAAGCGTGATTGA 930
|||||||| ||||||||||||||||||||||||
Sbjct 898 AGTTATCTAAAACCTTATTTCAAGCGTGATTGA 930
> AT3G47350.2 | Symbols: ATHSD2, HSD2 | hydroxysteroid dehydrogenase
2 | chr3:17446818-17449703 FORWARD LENGTH=996
Length=996
Score = 904 bits (489), Expect = 0.0
Identities = 695/795 (87%), Gaps = 11/795 (1%)
Strand=Plus/Plus
Query 1 ATGGATATGCTTAC-CACCATTCTCAATCTTCTTCTACCTCCTCTTACCATCAGTTTCCT 59
|||||||||||| | ||| ||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 31 ATGGATATGCTT-CACACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTTCT 89
Query 60 TGTCTTCTTTTACCCATTTTATGTTTTGATCAAACTTGTGCTTTGTCTTCATAAGTACCT 119
||| | ||||||||||||||| |||| | ||||||| || ||||| | |||| ||||
Sbjct 90 CGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-T--TAAGCACCT 146
Query 120 TCACTTCGAAAACG-TAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 178
|||||| ||||||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 147 TCACTTTGAAAACGTTA-CTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 205
Query 179 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 206 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCAAAATTAGCTCTTGTTGCTCGAA 265
Query 239 GAAGGGATCGTCTAGAGATTGTAGCTGAAACTTCACGTCAATTAGGATCTGGTAATGTCA 298
||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 266 GAAAGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGCGATGTCA 325
Query 299 TCACCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 326 TCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGACGAAACGA 385
Query 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAACAATGCTGGTA-TATTTCAAACTGTT 417
||| ||||||||||||||| ||||||||||||||||||||||| | || ||||||||||
Sbjct 386 TTCATCATTTCGGAAAACTGGACCACCTGATCAACAATGCTGG-AGTACCTCAAACTGTT 444
Query 418 CTTTTCGAAGATTTCACTCAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGG 477
| |||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 445 ATATTCGAAGATTTCACACAAATTCAAGACGCTAATTCTATAATGGATATCAACTTTTGG 504
Query 478 GGCACAACATACATCACTTATTTCGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATC 537
||| |||| |||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 505 GGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAAAAGCAAAGGAAAAATT 564
Query 538 GTCGCGATTACATCTGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATATATGCAGCA 597
|| | |||| | |||| | | |||| ||||||||||| | ||||||| | ||| |||||
Sbjct 565 GTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGCAAGCGTCTATTCAGCA 624
Query 598 AGCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCGGATATC 657
||||||||||| ||| ||| ||||||||| ||||||||| | ||| | ||||| ||||||
Sbjct 625 AGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGAGATCAGTCCCGATATC 684
Query 658 AAAATAACAATTGTTCT-CCCAGGAGTTGTATCAACAGATATGACCACACCTCACTGTAT 716
||||||||||| | ||| ||| ||| || |||| || ||||||||||| ||||| | ||
Sbjct 685 AAAATAACAATCGCTCTTCCC-GGATTTATATCTACGGATATGACCACTCCTCAGTTTAA 743
Query 717 GGAAAAGTATGGTTCAGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAAGCAAT 776
|||| ||||||||||||||| || || ||||||||||||||| |||||||||||| ||
Sbjct 744 AGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTCGATGCGCAAAAGCGAT 803
Query 777 CTTCAAAGGTATTGG 791
||||| |||||||||
Sbjct 804 CTTCAGAGGTATTGG 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5