BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323362
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47490.1 | Symbols: | HNH endonuclease | chr3:17498337-1750... 924 0.0
> AT3G47490.1 | Symbols: | HNH endonuclease | chr3:17498337-17500916
FORWARD LENGTH=890
Length=890
Score = 924 bits (500), Expect = 0.0
Identities = 644/707 (91%), Gaps = 35/707 (5%)
Strand=Plus/Plus
Query 1 ATGGATTGGCCTACGAC-A--CTCATCTCCAGAAGAATCTGTAATCTTTTGATTTTCTTC 57
||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGATTGGCCTACGACGACTCTCATCTCCCGAAGAATCTGTAATCTTTTGATTTTCTTC 60
Query 58 GTCAAATTAAACCACAAAAACCTCTCCATCGACTCGGATCACCCACAACACTCTGCGATG 117
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 61 GTCAAATTAAACCACAAAAACCTCTCCATCGATTCGGATAATCCACAACACTCTGCGATG 120
Query 118 AAACCCGACCCGGCCAGACGCAGAAACAGAGCCTTATCACCTTCTTCTTCTCCATC-AA- 175
|||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 121 AAACCCGACCCGACCAGACGCAGAAACAGAGCCTTAT---CTTCTTCTTCTCCATCAAAG 177
Query 176 A---GACCCG----A-C--CC--G----------GG--T-CCGGTGAAGCCCGCGGTGGA 210
| |||||| | | || | || | ||||||||||||| ||||||
Sbjct 178 ACCCGACCCGAACTATCTTCCGGGTCTCCCAACCGGAATACCGGTGAAGCCCGTGGTGGA 237
Query 211 AAGGTGAAAACTTCGGCCACTTTACTCGACCGGGAGGAGATGGGTCTTTTTCCCGGGTCT 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGGTGAAAACTTCGGCCACTTTACTCGACCGGGAGGAGATGGGTCTTTTTCCCGGGTCG 297
Query 271 GGTTACGATGACCCGAATCCAGAACCTAGGAGCTTTCCTTATAGTGTGAAGCAGCAATGT 330
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGTTACGGTGACCCGAATCCAGAACCTAGGAGCTTTCCTTATAGTGTGAAGCAGCAATGT 357
Query 331 TGGGAAAAAGCAGAGAAGATTAAAGGGAGAGATCCTGAGCGTTGGAGGAGAGATCATTTA 390
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 TGGGAAAAAGCAGAGAAGATTAAAGGAAGAGATCCTGAGCGTTGGAGGAGAGATCATTTA 417
Query 391 GGGAACATTGTGTTTCGAAAGCTCGTAGGTTGTCCTGGATGCTTGTGCCATGATTATGAT 450
||||||||||||||| | ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 418 GGGAACATTGTGTTTAGGAAGCTTGTTGGTTGTCCTGGATGCTTGTGTCATGATTATGAT 477
Query 451 CACATTGTTCCCTACTCCAAGGGCGGCAAGAGCACTCTGGAAAACTGCCAGGTTCTGCAG 510
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 478 CACATTGTTCCTTACTCCAAGGGCGGCAAGAGCACTCTGGAAAACTGTCAGGTTTTGCAG 537
Query 511 GCAAAGGTAAACCGATCAAAGGGAAATAAAACCGATATTTCTCGAGCCGAGCTTATCCAG 570
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 538 GCAAAGGTAAACCGATCAAAGGGTAATAAAACCGATATTTCTCGATCCGAGCTTATCCAA 597
Query 571 AGGAGTTCTTATTGTCGAGTTGCTGGCCGAGATATGGATCTCATTGAGCTAACAGCGTAC 630
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 598 AGGAGTTCTTACTGTCGAGTCGCTGGCCGAGATATGGATCTGATTGAGCTAACAGCTTAC 657
Query 631 GGGAATGTACAGCGCGCACCTGA-GTCCAGTGGATGCAGGATTCAGT 676
|||||||||||||| |||||| | ||| || |||||||| |||||||
Sbjct 658 GGGAATGTACAGCGTGCACCT-ACGTCTAGCGGATGCAGAATTCAGT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5