BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323367
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47550.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1351 0.0
AT5G62460.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 588 3e-167
AT2G02960.5 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 141 1e-32
> AT3G47550.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr3:17523458-17525540 FORWARD LENGTH=1318
Length=1318
Score = 1351 bits (731), Expect = 0.0
Identities = 819/863 (95%), Gaps = 0/863 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGATCATTTGAGTTTATGTACCGATCGTCTCATAACATCCGAGAGCTTGAACTCA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 190 ATGGCTGATCATTTGAGTTTATGTACCGATCGTCTCATAACATCTGAGAGCTTGGACTCA 249
Query 61 GAGAAAGATTCTGAGTCTTCTGGAGAAAGTTCTTACCGGCCTCAAGGCACAGACTTGGCT 120
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 250 GAGAAAGATTCAGATTCTTCAGGAGAAAGTTCTTACCGGCCTCAAGGCACAGACTTGGCT 309
Query 121 TCTTCATCTGTGGATGAAGCTGAGGAACCTAGAGAGTATTACGCGGTTGCGGAAGAGGAA 180
|||||||||||| ||||| |||||| ||||||||||| |||||||||||||| ||||||
Sbjct 310 TCTTCATCTGTGAATGAAACTGAGGTTCCTAGAGAGTACTACGCGGTTGCGGATGAGGAA 369
Query 181 GAACCACTTCTCCAATCTGTGGAGTGTCGTATTTGCCAGGAGGAAGATACCACTAAGAAC 240
||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 370 GAACCTCTTCTCCAATCTGTTGAGTGTCGTATTTGCCAAGAGGAAGATAGTACTAAGAAC 429
Query 241 CTTGAGGCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGTGTTCAG 300
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 430 CTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGTATGCTCACCGCAAGTGTGTTCAG 489
Query 301 CGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 490 CGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACAT 549
Query 361 GGATATACAGCACCTCCGCCTCCTCCTCCTGATGAAACTATAATTCATATCGGTGACGAT 420
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 GGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACTATAATTCACATCGGTGACGAT 609
Query 421 TGGGAGAACGGAGTTCCCTTGGACTTGAGCGATCCACGCATTCTGGCAATGGCTGCAGCA 480
||||||||||||||||| |||||||||| ||| || ||||||||||||||||| || |||
Sbjct 610 TGGGAGAACGGAGTTCCGTTGGACTTGACCGACCCGCGCATTCTGGCAATGGCGGCTGCA 669
Query 481 GAACGTCATTTCTTGGAAGCTGACTATGACGAGTATTCTGAGTCTAACTCAAGCGGAGCT 540
|||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||
Sbjct 670 GAACGTCATTTCTTGGAAGCAGACTATGATGAATATTCTGAGAATAACTCAAGCGGAGCT 729
Query 541 GCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTGCTGTTACGAGATGCACTA 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 730 GCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTACTGTTACGAGATGCGCTA 789
Query 601 AATCTCACAACAAACTCAGATGACGAGGACGATCCAACTGCCTTCTTCTCGCTTTTCCTT 660
||||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 790 AATCTCACAACGAACCCAGACGACGAGGACGATCCAACTGCCTTCTTCTCTCTATTCCTT 849
Query 661 CTTCGCGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATCGGTATACTA 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CTTCGTGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATCGGTATACTA 909
Query 721 CAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTTGCTTTCATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 910 CAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTTACTTTCATG 969
Query 781 ATACACGGTGGTGGGCCTCAACGCAGAGGACTGCACTTTGCTGTAGCACCGCAGCCGCCA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATACACGGTGGTGGGCCTCAACGCAGAGGACTGCACTTTGCTGTAGCACCGCAGCCGCCG 1029
Query 841 ATATCCAATGTCCCAACACCAGT 863
|||||||||||||||||||||||
Sbjct 1030 ATATCCAATGTCCCAACACCAGT 1052
> AT5G62460.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25074883-25077294 FORWARD LENGTH=1345
Length=1345
Score = 588 bits (318), Expect = 3e-167
Identities = 525/625 (84%), Gaps = 14/625 (2%)
Strand=Plus/Plus
Query 181 GAACCACTTC-TCCAATCTGTGGAGTGTCGTATTTGCCAGGAGGAAGATACCACTAAGAA 239
||||| | || ||||||| || || |||||||| ||||| ||||| ||| || ||||||
Sbjct 407 GAACCGC-TCATCCAATCGGTTGAATGTCGTATATGCCAAGAGGAGGATTCCGTTAAGAA 465
Query 240 CCTTGAGGCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGTGTTCA 299
||| ||| | |||||| |||||| ||||||||||||||||||||| || |||||||||||
Sbjct 466 CCTCGAGTCCCCTTGTTCTTGTAGTGGCAGTTTGAAGTATGCTCATCGTAAGTGTGTTCA 525
Query 300 GCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACC 359
||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||
Sbjct 526 ACGTTGGTGTAATGAGAAAGGCGACACAACCTGTGAAATATGCCACAAGTCTTATCAACC 585
Query 360 TGGATATACAGCACCTCCGCCTCCTCCTC-CTGATGAAACTATAATTCATATCGGTGACG 418
|||||| || || ||||| |||||||| | ||||||| || || ||| |||||||||| |
Sbjct 586 TGGATACACCGCTCCTCCTCCTCCTCC-CGCTGATGATACCATTATTGATATCGGTGAAG 644
Query 419 ATTGGGAG-AACGGAGTTCCCTTGGACTTGAGCGATCCACGCATTCTGGCAATGGCTGCA 477
|||||| | || || |||| ||| || |||| || ||||||||| |||||||||| ||
Sbjct 645 ATTGGG-GCAATGGTGTTCACTTAGATTTGAATGACCCACGCATTTTGGCAATGGCGGCT 703
Query 478 GCAGAACGTCATTTCTTGGAAGCTGACTATGACGAGTATTCTGAGTCTAACTCAAGCGGA 537
|||||||| |||||||| || || ||||||||||| || |||| |||||||| ||||||
Sbjct 704 GCAGAACGCCATTTCTTTGATGCGGACTATGACGAATACGCTGATTCTAACTCTAGCGGA 763
Query 538 GCTGCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTGCTGTTACGAGATGCA 597
||||| || ||||||||||||||||| || ||||||| ||||| || |||||| | ||
Sbjct 764 GCTGCATTCTGTCGCTCTGCTGCTCTTATATTAATGGCGCTTTTACTCTTACGACACGCT 823
Query 598 CTAAATCTCAC-AAC-A-AACTCAGATGACG-AG--GACGATCCAACTGCCTTCTTCTCG 651
|||||||| || ||| | ||||||||||||| || ||||||||| | || |||||||
Sbjct 824 CTAAATCTTACAAACAACAACTCAGATGACGAAGAAGACGATCCATCAGCTTTCTTCTTT 883
Query 652 CTTTTCCTTCTTCGCGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATC 711
|||||| | ||||| || ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 884 CTTTTCATGCTTCGAGCCGCTGGTTTTCTCCTCCCGTGTTACATCATGGCTTGGGCTATT 943
Query 712 GGTATACTACAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTT 771
||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 944 AGTATATTACAACGTCGAAGACAAAGACAGGAAGCTGCTGCTCTAGCTGCGGCAGAAGTA 1003
Query 772 GC-TTTCATGATACACGGTGGTGGG 795
|| ||| ||| |||| | ||||||
Sbjct 1004 GCGTTT-ATGTTACATAGCGGTGGG 1027
> AT2G02960.5 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:862087-864359 REVERSE LENGTH=1560
Length=1560
Score = 141 bits (76), Expect = 1e-32
Identities = 283/379 (75%), Gaps = 30/379 (8%)
Strand=Plus/Plus
Query 236 AGAACCTTGAG-GCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGT 294
|||| |||||| || ||||||||||| | |||||| | ||||||||||| | || |||
Sbjct 537 AGAATCTTGAGAGC-CCTTGTGCTTGCAGTGGCAGCCTAAAGTATGCTCATAGAAAATGT 595
Query 295 GTTCAGCGTTGGTGTAATGAGAAA-GGCGACATAACCTGTGAAATATGTCACCAGCCTTA 353
|||||||||||||| ||||| ||| || |||| | || || || ||||||||||||||
Sbjct 596 GTTCAGCGTTGGTGCAATGA-AAAGGGAAACATTATATGCGAGATTTGTCACCAGCCTTA 654
Query 354 TCAACCTGGATATACAGCACCTCCGCCTCCTCCTC--C-TGATGAAACTA-TAATTCATA 409
||||||||||||||| || || || ||||| | || | ||| ||||| | || || | |
Sbjct 655 TCAACCTGGATATACCGCTCCACCACCTCCACTTCAGCCTGAAGAAACAACTA-TTGACA 713
Query 410 TCGGTG-ACGATTGGGAGAA-CGGAGTTCCCTTGGACT-TG-AGCGATCCACG-CATTCT 464
| |||| | ||| || | || | || | ||||| | || | ||||| || | | ||
Sbjct 714 TTGGTGGAGGAT-GG-ACAATCTCAGGT---TTGGA-TGTGCAT-GATCCTCGTC-TCCT 765
Query 465 GGCAATGGCTGCAGCAGAACGTCATT-TCTTGGAAG-CTGACTATGACGAGTATTCTGAG 522
||||| |||| ||| ||||||| | | || || | |||| |||| || ||| | |
Sbjct 766 TGCAATTGCTGAAGCTGAACGTCGGTAT-TTAGA-GTCTGAATATGTGGAATATACAGCT 823
Query 523 TCTAACT-CAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTT-T 580
|| || | ||||||| || || || |||||||| |||||||| || ||||||| ||| |
Sbjct 824 TC-AAGTGCAAGCGGGGCCGCATTCTGTCGCTCAGCTGCTCTAATATTAATGGCTCTTCT 882
Query 581 TGCTGTTACGAGATGCACT 599
| || |||||| | |||||
Sbjct 883 T-CTCTTACGACACGCACT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5