BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323380
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 | chr3:17592... 1136 0.0
AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:25097... 178 1e-43
> AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 | chr3:17592625-17594132
FORWARD LENGTH=1178
Length=1178
Score = 1136 bits (615), Expect = 0.0
Identities = 828/927 (89%), Gaps = 30/927 (3%)
Strand=Plus/Plus
Query 76 GAACAACAAGGATCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAG---GTCTCTGAC 132
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 98 GAAGAACAAGGGTCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAGTTATTCTCTGAT 157
Query 133 TGTGATCAGCAACATTCTTCAATAGCTAACGAGCTCGGGCTAATGGAGTTGCCTAAAGAC 192
|||||||| ||||||||||| |||||||||||| |||| |||| ||||||||||||||||
Sbjct 158 TGTGATCAACAACATTCTTCCATAGCTAACGAGTTCGGACTAACGGAGTTGCCTAAAGAC 217
Query 193 GATAAAGCTTACAAGCTAATCTATGGTCATTGCCAATCTAAGCTAACTTCTCACTTAGGC 252
||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 218 GATAAAGTTTACGAGCTTATCTACCGTCATTGCCAATCTAAGCTAACTTCTCACTTAAGC 277
Query 253 AATCAATTTCAGATTGTATCAATTCTCAAGAACGGATTTAAAACACCATTAGGACAAGCT 312
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 278 AATCAGTTTGAGATTGTATCAATTCTCAAGAACGGATTTCAAACACCATTAGGACAAGCT 337
Query 313 AAGCTCAAAGCCTTTCAGATATACACTGAGTCTGTGGCAAAGAAAAGCGGAAGTTACTGC 372
||||| ||||||||||| |||||| |||||||||| |||||||||||||| || ||||
Sbjct 338 AAGCTTAAAGCCTTTCAAATATACGCTGAGTCTGTTGCAAAGAAAAGCGGCAG---CTGC 394
Query 373 GAATGCGGTGGAAACAAAGCTGCTGCTGG-TGAAGCAGCGAGAGTGAAATACGGTTGTTG 431
| |||||||||||||||| | ||| |||||| |||||||||||||||||||||||
Sbjct 395 ---T---GTGGAAACAAAGCTGC-GGTGGCTGAAGCGGCGAGAGTGAAATACGGTTGTTG 447
Query 432 CGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTATGGATTTAGCCAGTTTAGGAA 491
|||||||||||||||||||||||||||||||||||||||| | | | |||| |
Sbjct 448 CGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTAT-G-----G--A-TTTA-G-- 495
Query 492 CAACAATGGCTTATGTCTCTCACCAGACAATGCTTCTCTTCAATGTATGATAGATCCTTC 551
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 496 CAACAATGCCTTATGTCTCTCACCAGACAATGCTCCTCTTCAATGTATGATAGATCCTTC 555
Query 552 ATCATCTTGTAACGAAGACGGGACTAGATTCTTGTTGTTTTCAAGAATTATTATGGGAAA 611
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 556 ATCATCTTGTAACGAAGACGGGATTAGCTTCTTGCTGTTTTCAAGAATTATTATGGGAAA 615
Query 612 ATCAGAGGTTATGGGCTCGACCGCACAATCGTATCCGAGTTCTCCAGAGTTTGATTCAGG 671
|||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 616 ATCAGAGGTTGTGTGCTCGACATCACAATCGTATCCGAGTTCTATGGAGTTTGATTCAGG 675
Query 672 TGTAGACAGTTTAATATCTCCGAAGAAGTATATGATTTGGAGCACACACATGAACACTCA 731
|||||||||||| | |||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 676 TGTAGACAGTTTGACATCTCCAAACAAGTATATTATTTGGAGCACACACATGAACACTCA 735
Query 732 TGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCCATCTTGAGAAGTAAGAACCC 791
||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||
Sbjct 736 TGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCTATCTTGAAAAGAAAAAACCC 795
Query 792 GAAATCGCCTTGGATTTTGTTTCCAATACTGA-TCAAATCGATATCGAAGTTTCTAAACC 850
|||||| |||||||||| |||||| | || | |||| |||||||| ||||||||||| |
Sbjct 796 GAAATCTCCTTGGATTTCGTTTCCGGT-CTTAATCAACTCGATATCAAAGTTTCTAAATC 854
Query 851 CGTCGCAAATCCGTCTCATTCAGAAACACTATAAAGAATATCAAGAAAGTAGAATCTTAC 910
|||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |
Sbjct 855 AATCGCAAATCCGTCTCATTCATAAACACTATAAAGAACATCAAGATAGGAGAATCTCGC 914
Query 911 GGTTTGAGTTGATTCAACGACTGAGGACTATAGCCGGAGATAGGTTATTGGTTCAAATCA 970
||| ||||||||||||||| ||||| | |||| | |||||||| ||||||||||||||||
Sbjct 915 GGTGTGAGTTGATTCAACGCCTGAGAAGTATAACTGGAGATAGCTTATTGGTTCAAATCA 974
Query 971 TCAAATCT-TTCGGACAAAAGGTACAT 996
|||||||| || |||||||||||||||
Sbjct 975 TCAAATCTGTT-GGACAAAAGGTACAT 1000
> AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:25097998-25099907
FORWARD LENGTH=1646
Length=1646
Score = 178 bits (96), Expect = 1e-43
Identities = 342/455 (75%), Gaps = 39/455 (9%)
Strand=Plus/Plus
Query 565 GAAGACGGGACT-AGATTCTTGTTGTTTTCAAGAATTATTA-TGGGAAAATCAGAGGTTA 622
||||| |||| | |||||||||||| ||| ||| || || | |||||||||||| ||
Sbjct 557 GAAGATGGGA-TGAGATTCTTGTTGCTTTGTAGAGTT-CTACTTGGAAAATCAGAGATTG 614
Query 623 TGGGCTC--GAC-CGCAC-A-ATCGTATCCGAGTTCTCCAGAGTTTGATTCAGGTGTAGA 677
| ||| | | || || | ||| | ||| ||||| |||||||||||||| ||||| ||
Sbjct 615 T-TCCTCAAGGCTCG-ACTAGATCATGTCCAAGTTCACCAGAGTTTGATTCTGGTGTGGA 672
Query 678 CAG-TTTAATATCTCCGAAGAAGTATA-TGATTTGGAGCACACACATGAACACTCATGTT 735
| |||| | ||| |||||||||||| || | ||||| |||||||||||||||||||||
Sbjct 673 -TGATTTAGTTTCTACGAAGAAGTATATTG-TGTGGAGTACACACATGAACACTCATGTT 730
Query 736 TTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCCATCTTGA---GAAGT--AA-GA-A 788
|||||||||||| |||||||||||||| |||||| | | | | ||||| || || |
Sbjct 731 TTGCCTGAGTTTCTTGTTTGCATCAAAGCTCCATTTAACCTAACTCGAAGTCCAAAGAGA 790
Query 789 CCCGAAATCGCCTTGGATTTTGTTTCCAATACTGATCAAATCGATA-TCGAAGTTTCTAA 847
|| ||| || ||||| ||||| || |||||||| | || || |||||||||
Sbjct 791 TT-GAGATCACCATGGATGGCATTTCCTGTATTGATCAAAGC-ATTGTCCAAGTTTCTAC 848
Query 848 AC-CCGTCGCAAATCCGTCTCATTCAGAAACACTATAAAGAAT-ATCAAGAA-AGTAGAA 904
| || || ||||| | | ||||||||||||| || ||||| | | ||| || || ||||
Sbjct 849 -CTCCTTCTCAAATACTTGTCATTCAGAAACATTACAAAGA-TCAACAA-AATAGGAGAA 905
Query 905 TCTT-ACGGTTTGAGTTGATTCAACGACTGAGGA-CTATAGCCGGAGATAGGTTATTGGT 962
| | |||| || | || |||||| | || | | ||| ||||||| | |||| | ||
Sbjct 906 T-TACACGGAGCGAACTAATCCAACGAGTCAGAAGC-ATAACCGGAGACAAGTTACTAGT 963
Query 963 TCAAATCATCAAATCTT-TCGGACA-AAAGGTACA 995
||| ||||||||| ||| | ||||| |||| ||||
Sbjct 964 TCACATCATCAAAGCTTGT-GGACATAAAG-TACA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5