BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323394

Length=1458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62640.3 | Symbols:  | proline-rich family protein | chr5:25...   211    1e-53


> AT5G62640.3 | Symbols:  | proline-rich family protein | chr5:25149433-25152541 
REVERSE LENGTH=1964
Length=1964

 Score =  211 bits (114),  Expect = 1e-53
 Identities = 340/443 (77%), Gaps = 40/443 (9%)
 Strand=Plus/Plus

Query  70   AACAAGCTAGAGA-GAAAGAAGATAAGAGAGGTCGGGATTTTAAACAAGGATCCTGAACA  128
            ||||||  ||||| | || ||| || ||||||| || ||||| || ||||||||||||||
Sbjct  347  AACAAGAAAGAGAGGCAA-AAGGTACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACA  405

Query  129  AATTAAGGAACAGATCAGGAAACTAGATATCTCAAAGGCTGAAGGTGCTTTGGACAAAGC  188
             || ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct  406  GATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAGC  465

Query  189  AAGAAAACATAAAAAGAGACAACTTGAAGATACT-TTGCAGATG-TCGAA---G--GAGC  241
            ||||||||||||||||||||| |||||||||||| ||  | ||| | |||   |  ||| 
Sbjct  466  AAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAA-ATGGTGGAATATGATGAGA  524

Query  242  A---G--GG-G---G-A-AC-CTACAACCTCTGTTATGTTCAGCCACCTACCCCCACAAC  289
            |   |  || |   | | |  | |||||||||||||||||||| || |||||||| || |
Sbjct  525  AAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTCATCTACCCCCTCAGC  584

Query  290  GAAGACCTGGCGAGGAGGATGAAAGATCAAAGGATTTAACACCAGAGGACTCTGTTTATT  349
            |||||  |  |  || | |  |  ||     ||| |||| ||||||||||||||||||||
Sbjct  585  GAAGAT-TAACT-GGCG-A--A--GA-----GGACTTAAAACCAGAGGACTCTGTTTATT  632

Query  350  ATCACCCCACCTTGAACCCGACTGGTTCGCCACCCCCTGGAAAGCCACCCATATTTGGCT  409
            ||||||| || |||||||| |||||| | |||||||| ||||||||||| || | |   |
Sbjct  633  ATCACCCTACTTTGAACCCAACTGGTGCACCACCCCCGGGAAAGCCACCAATGTATAATT  692

Query  410  ATATTGCA--GGACCTGGAATCCCCTTAGATGGCGCTTCCTCTAGTGGTGTTGCATCATC  467
              ||  ||  |||| ||  ||| ||| |||||| ||||| |||||| ||| |||||  ||
Sbjct  693  C-ATC-CATAGGACTTGCTATCTCCTCAGATGGTGCTTCATCTAGTAGTGCTGCATTGTC  750

Query  468  TTCAAATTAT-GAGTTGGAAGAT  489
            ||| | |||  ||||  ||||||
Sbjct  751  TTCTA-TTACCGAGTCAGAAGAT  772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71887180440


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5