BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323436
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48360.1 | Symbols: BT2, ATBT2 | BTB and TAZ domain protein ... 1661 0.0
> AT3G48360.1 | Symbols: BT2, ATBT2 | BTB and TAZ domain protein
2 | chr3:17908192-17910525 REVERSE LENGTH=1439
Length=1439
Score = 1661 bits (899), Expect = 0.0
Identities = 1032/1095 (94%), Gaps = 14/1095 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTGTTCTTGTCGCGATGTCCGTACCCGCCACAACTGAAGACGACGGATTTTCG 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 55 ATGGAAGCTGTTCTTGTCGCAATGTCCGTCCCCGCCACAACGGAAGACGACGGATTTTCG 114
Query 61 TTAATCACCGATAAACTTTCATATAACCTAACGACAACGTCGGACGTTGAGATCGTTACC 120
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 115 TTAATCACCGATAAACTTTCATATAATCTAACGCCGACGTCGGACGTTGAGATCGTTACC 174
Query 121 TCCAATAACCGTCGGATTCCGGCACACTCCGGTGTTCTGGCTTCAGCTTCACCGGTACTA 180
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 175 TCCGATAACCGTCGGATTCCGGCACACTCCGGCGTTCTGGCTTCAGCTTCACCGGTACTG 234
Query 181 ATGAACATCATGAAGAAACCGGTGAGACGTTACAGAGGCTGTGGATCTAAAAGAGTCATC 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATGAACATCATGAAGAAACCGATGAGACGTTACAGAGGCTGTGGATCTAAAAGAGTCATC 294
Query 241 AAGATTCTTGGCGTTCCATGCGACGCCGTTTCGGTTTTGATCAAATTCCTCTACTCTTCT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 295 AAGATTCTTGGCGTTCCATGCGACGCCGTTTCGGTTTTTATCAAATTCCTCTACTCTTCT 354
Query 301 AGGTTGGTTTGTTTGACGGAGGATGAGATGGAGAGACACGGAATCCATCTTTTGGCGTTG 360
| |||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 355 A---------GTTTGACGGAGGATGAGATGGAGAGATATGGAATCCATCTTTTAGCGTTG 405
Query 361 TCTCATGTCTACATGGTCACGCAGCTCAAGCAACGGTGCTCAAAATGCGTTGTACAGA-G 419
||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| | |
Sbjct 406 TCTCACGTCTACATGGTCACCCAGCTGAAGCAACGGTGCTCAAAAGGCGTTGTACA-ACG 464
Query 420 GTTAACGACGGAGAACGTAGTCGACGTTCTCCAGCTAGCTCGGCTTTGTGATGCACCTGA 479
||||| || ||||||||||||||||| ||||||||||||||||| || || ||||| ||
Sbjct 465 TTTAACTACAGAGAACGTAGTCGACGTCCTCCAGCTAGCTCGGCTCTGCGACGCACCCGA 524
Query 480 TGTTTGCCTTCGATCTATGCGCCTGATACATTTGAAGTTTAAGACCGTTGAGCAGACCGA 539
||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||| ||
Sbjct 525 TGTTTGCCTTCGATCTATGCGTCTGATCCATTCGCAGTTTAAGACCGTTGAGCAGACTGA 584
Query 540 AGGATGGAAGTTTATTCAGGAACATGATCCTTTCCTCGAGCTCGACATTCTCCAGTTCAT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGGATGGAAGTTTATTCAAGAACATGATCCTTTCCTCGAGCTCGACATTCTCCAGTTCAT 644
Query 600 CGATGACGCCGAATCGAGGAAGAAAAGAAGACGACGACATAGAAAGGAGCAGGATCTTTA 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 645 CGATGACGCCGAATCGAGGAAGAAAAGAAGGCGACGACATAGAAAGGAGCAGGATCTTTA 704
Query 660 CATGCAGCTAAGCGAAGCAATGGAGTGTATAGAGCACATATGCACACAAGGTTGTACATT 719
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 705 CATGCAACTAAGCGAGGCAATGGAGTGCATAGAGCACATATGCACACAAGGTTGTACATT 764
Query 720 GGTCGGTCCACCAAACGTAGTAG---ACAACAACAAGTCAATGGTTGCGGAAAAGTCAAA 776
|||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||| |
Sbjct 765 GGTCGGTCCATCAAACGTAGTAGATAACAACAAAAAGTCAATGACTGCGGAAAAGTCAGA 824
Query 777 GCCTTGTAAGGCGTTTTCCACGTGTTATGGTCTTCAGCTTTTGATACGTCACTTTGCCGT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCCTTGTAAGGCGTTTTCCACGTGTTATGGTCTTCAGCTTTTGATACGTCACTTTGCCGT 884
Query 837 ATGCAAGAGGAGGAATAACGATAAGGGTTGTCTTCGTTGCAAGCGGATGCTTCAACTCTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGCAAGAGGAGGAATAACGATAAGGGTTGTCTTCGTTGCAAGCGGATGCTTCAACTCTT 944
Query 897 TAGACTCCATTCTTTGATTTGCGATCAACCGGATTCTTGTCGCGTCCCTCTTTGCAGGCA 956
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 945 TAGACTCCATTCTTTGATTTGTGATCAACCCGATTCTTGTCGCGTCCCTCTCTGCAGGCA 1004
Query 957 ATTTAAGAAAAGGGGAGAACAAGACAAGAAAATGGGTGAAGACACCAAGTGGAAGCTTCT 1016
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATTTAGGAAACGGGGAGAACAAGACAAGAAAATGGGTGAAGACACCAAGTGGAAGCTTCT 1064
Query 1017 GGTGACAAGGGTTGTGTCTGCAAAAGCTATGTCTTCGTTGTGTCAGTCAAAGAAGAACAA 1076
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1065 GGTGACAAGGGTTGTGTCTGCAAAAGCTATGACGTCGTTGTGTCAGTCAAAGAAGAACAA 1124
Query 1077 ATGTGAAGAAGCACA 1091
||||||| |||||||
Sbjct 1125 ATGTGAACAAGCACA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5