BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323445

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48480.1 | Symbols:  | Cysteine proteinases superfamily prot...   401    3e-111


> AT3G48480.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr3:17957098-17959124 REVERSE LENGTH=1187
Length=1187

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 233/241 (97%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAGAAGACGAAGTAATCGTGTTCGAAATACTAATAGTAAATACGTCACCAGTCCT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  63   ATGTCAAGAAGACGAAGTAATCGTGTTCGAAATACTAATAGTAAATACGTCAGCAGTCCT  122

Query  61   GTTCGTGTTACTATTATTGATGATTGTGAGGAAGATGAGTTTTTACACCACAGGACGTGT  120
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  123  GCTCGTGTTACTATTATTGATGATTGTGAGGAAGATGAGTATTTACACCACAGGACGTGT  182

Query  121  TGGAAGCATATTGCTGCTGTCTTGAATAAGTGTGGTTCGAAACCGAAGCGAGCCAAGGAG  180
            ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct  183  TGGAAGCATATTGCTGCTGCCTTGAGTAAGTGTGGTTCGAAACCGAAGCGAACCAAGGAG  242

Query  181  TTGGAGATGTTCAAATTGAGTGCTCCTTGTTTCTATGACGAATGCACACGCCGTGGGAGG  240
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  243  TTGGAGATATTCAAATTGACTGCTCCTTGTTTCTATGACGAATGCACACGCCGTGGGAGG  302

Query  241  T  241
            |
Sbjct  303  T  303


 Score =  374 bits (202),  Expect = 6e-103
 Identities = 249/272 (92%), Gaps = 2/272 (1%)
 Strand=Plus/Plus

Query  240  GTTTGTGTTGGACATATATAGAGCCGAGGGAAGAACTGAAGACCCAAGACTGGTTGATGA  299
            |||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||
Sbjct  689  GTTTGTGTTGGACATATACAGAGCTGAGGGAAGAACTGAAGACTCAAGTCTGGTTGATGA  748

Query  300  AATCCCGTTCCATGTGCCAGTGGTTCCACAGCAGACAAATGATGTGGAATGTGGAAGCTT  359
            |||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  749  AATCCCGTTTTATGTGCCAATGGTTCCACAGCAAACAAATGATGTGGAATGTGGAAGCTT  808

Query  360  TGTTCTCTACTACATTCAGCGGTTCATAGAAGATGCCCCTGAGAACTTCAGCGTCGATGA  419
            ||| |||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||
Sbjct  809  TGTCCTCTACTACATTCATCGGTTCATAGAAGACGCTCCTGAGAACTTCAACGTCGAAGA  868

Query  420  TATGCCATATTTTATGAAAGAGGATTGGTTTAGCCATAAAGAGTTGGAAGAGTTCTGTGA  479
            |||||| |||||| |||||||||| |||||||| |||||||| |||||| ||||||||||
Sbjct  869  TATGCCGTATTTTCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGA  928

Query  480  -GACGCTTCATTCTTTGGGAACCATTCATTGA  510
             || |||||||||||||||||| |||||||||
Sbjct  929  CGA-GCTTCATTCTTTGGGAACTATTCATTGA  959



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5