BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323459

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48660.1 | Symbols:  | Protein of unknown function (DUF 3339...   357    3e-98


> AT3G48660.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr3:18029659-18030133 FORWARD LENGTH=270
Length=270

 Score =  357 bits (193),  Expect = 3e-98
 Identities = 247/270 (91%), Gaps = 15/270 (6%)
 Strand=Plus/Plus

Query  1    ATGGCGGATTGGGGACCTGTTGTGGTCGCTGTGATATTGTTCGTGCTTTTGACTCCGGGA  60
            ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGGCGGATTGGGGACCTGTTGTAGTCGCTGTGATACTGTTCGTGCTTTTGACTCCGGGA  60

Query  61   CTTCTCTTTCAGATTCCGGCGAGAGGTCGTGTCGTCGAATTTGGTAATATGCAGACTAGT  120
            |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  61   CTTCTCTTTCAGATTCCGGCGAGAGGTCGTGTTGTTGAATTTGGTAATATGCAGACTAGT  120

Query  121  GGTGCGTCTATTCTCGTCCACACCATCATTTTCTTCGGTCTTATCACCATCTTCACCATC  180
            || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GGAGCGTCGATTCTCGTCCACACCATCATTTTCTTCGGTCTTATAACCATCTTCACCATC  180

Query  181  GCCATTCGTCTCCATATCTATACCG-C-CT------T-AG--TT--T--GGTTTATTGGT  225
            ||||||||||||||||||||||||| | ||      | ||  ||  |  |||||||||||
Sbjct  181  GCCATTCGTCTCCATATCTATACCGGCACTAGGCAGTTAGCCTTAGTTTGGTTTATTGGT  240

Query  226  ATTCGAATTCAAATTGGAATTGAGTACTAA  255
            |||||| |||||||||||||||||||||||
Sbjct  241  ATTCGAGTTCAAATTGGAATTGAGTACTAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5