BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323485 Length=528 Score E Sequences producing significant alignments: (Bits) Value AT3G48940.1 | Symbols: | Remorin family protein | chr3:1814286... 798 0.0 AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806... 364 4e-100 > AT3G48940.1 | Symbols: | Remorin family protein | chr3:18142863-18144163 REVERSE LENGTH=528 Length=528 Score = 798 bits (432), Expect = 0.0 Identities = 497/529 (94%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 1 ATGACTCTAGAGGAGCAGAAGAAAGTCATAGA-GCCCGAGACCGTGGCATCGGACCCATC 59 |||||| ||||||||||||||||||||||| | ||||||| |||| |||||||| ||||| Sbjct 1 ATGACTTTAGAGGAGCAGAAGAAAGTCATA-ATGCCCGAGGCCGTCGCATCGGAGCCATC 59 Query 60 ACCACCATCCAAGGAGGAGAAGTCGGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 ACCACCATCCAAGGAGGAGAAGTCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119 Query 120 AAAAGAACCTGCGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179 |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 120 AAAAGAACCTACGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179 Query 180 ACTTGAGCAAGATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 ACTCGAGCAAGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239 Query 240 AGTGGAGAACAAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 240 AGTGGAGAACAAAGCTCAGAAGAAGATTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299 Query 300 AGCTTGTGTTGAAGCTGAGCTTAAAATGATTGAGGAGCAACTTCTTAAAAAGAAAGCACG 359 ||||| ||| ||||||||||| |||| ||| ||||||||||| ||| |||||||||| Sbjct 300 AGCTTCTGTGGAAGCTGAGCTAAAAAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACA 359 Query 360 TTACACAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAG 419 ||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| Sbjct 360 CTACACAGAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAG 419 Query 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479 Query 480 GTACCGCGCCACAGGAACTGCTCCAACGAAGCTATTTGGATTGTTCTGA 528 |||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct 480 GTACCGTGCCACCGGAACTGCTCCAACCAAGCTATTTGGATTCTTCTGA 528 > AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806-8011619 REVERSE LENGTH=973 Length=973 Score = 364 bits (197), Expect = 4e-100 Identities = 375/458 (82%), Gaps = 23/458 (5%) Strand=Plus/Plus Query 73 GAGGAGAAGTC-GGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCT-G 130 ||||||||| | || || || || |||||||||| ||||||| | | |||||| | | Sbjct 323 GAGGAGAAG-CAAGAAGACTCTAAGGCTATTGTTCCCGTCGTC-C--CTAAAGAA-GTAG 377 Query 131 CGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTTGAGCA-A 189 |||||||||||||||||| |||||| | |||||||||||| ||| |||| ||||| | | Sbjct 378 AGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAG-ACA 436 Query 190 GATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAAC 249 || |||||||| || || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 437 GAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAAC 496 Query 250 AAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAAAGCTTG-TGT 308 |||||| ||||||||||||||||| ||||| | ||||| |||| ||||||||| | ||| Sbjct 497 AAAGCTGAGAAGAAGCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCA-GCTGT 555 Query 309 TGAAGCTGAGCTTAA-AATGATTGAGGAGCAACTTCTTA-AA-AAGAAAGCAC-GTTACA 364 ||||||||||| || || || ||||||||| || | || ||||| ||| || | Sbjct 556 GGAAGCTGAGCTCAAGAAA-ATGGAGGAGCAA-TTGG-AGAAGAAGAAGGCAGAGT-ATG 611 Query 365 CAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAGAGCGA 424 ||||| ||||||||||||||||| ||||| |||||| |||| |||||||||||||||| Sbjct 612 TGGAGCAGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGA 671 Query 425 TGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACC 484 ||| |||||||| || |||||||| |||||||||| || ||| | || || ||||||| Sbjct 672 TGATTGAAGCTAAGCGTGGAGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACC 731 Query 485 GCGCCACAGGAACTGCTCC-AACGAAGCTATTT-GGAT 520 | ||||| ||||| ||||| || ||||| ||| |||| Sbjct 732 GTGCCACTGGAACCGCTCCCAAA-AAGCT-TTTCGGAT 767 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25267775941 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5