BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323485
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48940.1 | Symbols: | Remorin family protein | chr3:1814286... 798 0.0
AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806... 364 4e-100
> AT3G48940.1 | Symbols: | Remorin family protein | chr3:18142863-18144163
REVERSE LENGTH=528
Length=528
Score = 798 bits (432), Expect = 0.0
Identities = 497/529 (94%), Gaps = 2/529 (0%)
Strand=Plus/Plus
Query 1 ATGACTCTAGAGGAGCAGAAGAAAGTCATAGA-GCCCGAGACCGTGGCATCGGACCCATC 59
|||||| ||||||||||||||||||||||| | ||||||| |||| |||||||| |||||
Sbjct 1 ATGACTTTAGAGGAGCAGAAGAAAGTCATA-ATGCCCGAGGCCGTCGCATCGGAGCCATC 59
Query 60 ACCACCATCCAAGGAGGAGAAGTCGGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 ACCACCATCCAAGGAGGAGAAGTCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119
Query 120 AAAAGAACCTGCGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179
|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 AAAAGAACCTACGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179
Query 180 ACTTGAGCAAGATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ACTCGAGCAAGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239
Query 240 AGTGGAGAACAAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AGTGGAGAACAAAGCTCAGAAGAAGATTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299
Query 300 AGCTTGTGTTGAAGCTGAGCTTAAAATGATTGAGGAGCAACTTCTTAAAAAGAAAGCACG 359
||||| ||| ||||||||||| |||| ||| ||||||||||| ||| ||||||||||
Sbjct 300 AGCTTCTGTGGAAGCTGAGCTAAAAAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACA 359
Query 360 TTACACAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAG 419
||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||
Sbjct 360 CTACACAGAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAG 419
Query 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479
Query 480 GTACCGCGCCACAGGAACTGCTCCAACGAAGCTATTTGGATTGTTCTGA 528
|||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 480 GTACCGTGCCACCGGAACTGCTCCAACCAAGCTATTTGGATTCTTCTGA 528
> AT5G23750.1 | Symbols: | Remorin family protein | chr5:8009806-8011619
REVERSE LENGTH=973
Length=973
Score = 364 bits (197), Expect = 4e-100
Identities = 375/458 (82%), Gaps = 23/458 (5%)
Strand=Plus/Plus
Query 73 GAGGAGAAGTC-GGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCT-G 130
||||||||| | || || || || |||||||||| ||||||| | | |||||| | |
Sbjct 323 GAGGAGAAG-CAAGAAGACTCTAAGGCTATTGTTCCCGTCGTC-C--CTAAAGAA-GTAG 377
Query 131 CGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTTGAGCA-A 189
|||||||||||||||||| |||||| | |||||||||||| ||| |||| ||||| | |
Sbjct 378 AGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAG-ACA 436
Query 190 GATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAAC 249
|| |||||||| || || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 437 GAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAAC 496
Query 250 AAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAAAGCTTG-TGT 308
|||||| ||||||||||||||||| ||||| | ||||| |||| ||||||||| | |||
Sbjct 497 AAAGCTGAGAAGAAGCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCA-GCTGT 555
Query 309 TGAAGCTGAGCTTAA-AATGATTGAGGAGCAACTTCTTA-AA-AAGAAAGCAC-GTTACA 364
||||||||||| || || || ||||||||| || | || ||||| ||| || |
Sbjct 556 GGAAGCTGAGCTCAAGAAA-ATGGAGGAGCAA-TTGG-AGAAGAAGAAGGCAGAGT-ATG 611
Query 365 CAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAGAGCGA 424
||||| ||||||||||||||||| ||||| |||||| |||| ||||||||||||||||
Sbjct 612 TGGAGCAGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGA 671
Query 425 TGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACC 484
||| |||||||| || |||||||| |||||||||| || ||| | || || |||||||
Sbjct 672 TGATTGAAGCTAAGCGTGGAGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACC 731
Query 485 GCGCCACAGGAACTGCTCC-AACGAAGCTATTT-GGAT 520
| ||||| ||||| ||||| || ||||| ||| ||||
Sbjct 732 GTGCCACTGGAACCGCTCCCAAA-AAGCT-TTTCGGAT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5