BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323502
Length=3339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)... 3895 0.0
AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase fam... 652 0.0
AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein... 322 1e-86
AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein... 104 6e-21
> AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18226911-18229610 REVERSE
LENGTH=2606
Length=2606
Score = 3895 bits (2109), Expect = 0.0
Identities = 2307/2404 (96%), Gaps = 8/2404 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCCACCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 11 ATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCAACCG 70
Query 61 TCCATTTCAAATCGGATCAACGTCGCTGACCGTTTGATTCTCCGTCATCTCAATGCCGGA 120
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 71 TCCGTTTCAAATCGGATCAACGTCGCCGACCGTTTGATTCTCCGTCATCTCAATGCCGGA 130
Query 121 GACCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCCATG 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 131 GATCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATG 190
Query 181 GATTCTGTCACTTTCTCTTCACTCCTCAAATCTTGTATCCGAGCACGCCATTTTCGTCTC 240
|| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 191 GACTCAGTCACTTTCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTC 250
Query 241 GGGAAACTCGTTCACGCTCGATTAATCGAGTTTGAAATCGAGCCTGACTCGTTTATCTAC 300
||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || |||||
Sbjct 251 GGGAAACTCGTACACGCTCGATTAATCGAGTTTGATATCGAGCCTGATTCGGTTCTCTAC 310
Query 301 AATTCGTTGATTAGCTTGTATTCAAAATCTGGAGATTTGAG-GAAAGCT-AAGGATGTGT 358
||||||||||||||||||||||| ||||||||||||| | | ||||||| || |||||||
Sbjct 311 AATTCGTTGATTAGCTTGTATTCGAAATCTGGAGATTCG-GCGAAAGCTGAA-GATGTGT 368
Query 359 TTGAGACTATGGGAAGATTTGGTATGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTT 418
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 369 TTGAGACTATGAGAAGATTTGGTAAGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTT 428
Query 419 GTTTCGGTAACAACGGAAGAGAATTCGATGCGATTAAGCTTTTTGTTGAGTTTCTGGAAT 478
||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
Sbjct 429 GTTACGGTAACAACGGAAGAGAATTAGATGCAATTAAGGTTTTTGTTGAGTTTCTGGAGT 488
Query 479 TGGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCAAATTCGG 538
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 489 TAGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCGAATTCGG 548
Query 539 ATTTTGTTGGAGTTGGGAGAGTGATTTTAGGGTTTTTGATGAAGACTGGGTATTTTGAAT 598
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 549 ATTTTGTTGGAGTTGGGAGAGTGACTTTAGGGTTTTTGATGAAGACTGGGCATTTTGAAT 608
Query 599 CTGATGTTTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGTTTTG 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 609 CTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGCTTTG 668
Query 659 AGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGA 728
Query 719 TGATTACTCGGTGTATGCAAATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATA 778
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TGATTACTCGGTGTATGCAGATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATA 788
Query 779 TGGTTTTAAGCGGATTTGAATCGGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTG 838
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 789 TGGTTTTAAGTGGATTTGAATCAGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTG 848
Query 839 CTGAGTTGGAGAATTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGC 898
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CTGAGTTGGAGAACTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGC 908
Query 899 TTGTGGATGATGTTGAGTGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTT 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGTGGATGATGTTGAATGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTT 968
Query 959 CGGTAGATGACTGCAGGAAGGTGTTTGATAGAATGCAGGATCATAGTGTTATGTCGTGGA 1018
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 969 CGGTAGATGATTGCAGGAAGGTGTTTGATAGAATGGAGGATCATAGTGTTATGTCGTGGA 1028
Query 1019 CGGCATTGATCACTGGTTACATGCAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCT 1078
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1029 CGGCATTGATCACTGGTTATATGAAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCT 1088
Query 1079 TTAGTGAAATGATAACCCAAGGTCATGTTGAGCCAAATCATTTCACTTTTTCGAGTGCAT 1138
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1089 TTAGTGAAATGATAACGCAAGGTCATGTTGAGCCAAATCATTTCACTTTCTCGAGTGCAT 1148
Query 1139 TCAAGGCGTGTGGAAATGTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCATGCTT 1198
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1149 TCAAGGCGTGTGGAAATCTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCAAGCTT 1208
Query 1199 TCAAAAGAGGACTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTA 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TCAAAAGAGGGCTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTA 1268
Query 1259 AATGTGACAGGATGGAAGATGCTCGGACAGCTTTTGAATCACTTTCTGAGAAAAACTTGG 1318
||| |||||||||||||||||||| || ||||||||| |||||||||||||| |||||||
Sbjct 1269 AATCTGACAGGATGGAAGATGCTCAGAGAGCTTTTGAGTCACTTTCTGAGAAGAACTTGG 1328
Query 1319 TCTCATATAACACCTTTCTTGATGGAACCTGCAGGAACTTGGATTTTGAGCAAGCTTTTG 1378
| || ||||| || |||||||| ||||| |||||||||||| ||||||||||||| |||
Sbjct 1329 TTTCGTATAATACATTTCTTGACGGAACATGCAGGAACTTGAATTTTGAGCAAGCATTTA 1388
Query 1379 AGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCT 1448
Query 1439 TGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCCCACG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1449 TGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCTCAGG 1508
Query 1499 TGGTTAAACTCGGGCTCTCGTGCAATCAACCTGTCTGCAATGCTTTGATCTCTATGTATT 1558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1509 TGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGCAATGCTTTGATCTCTATGTATT 1568
Query 1559 CCAAATGCGGAAGCATTGACACAGCTTCCCGAGTCTTCAGTTTAATGGATAATCGTAATG 1618
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1569 CCAAATGTGGAAGCATTGACACAGCTTCCCGAGTCTTCAATTTTATGGAAAATCGTAATG 1628
Query 1619 TTATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCTGA-AAGGGTC 1677
| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1629 TCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCT-ATAAGGGTA 1687
Query 1678 CTCGAAACATTCAACCAAATGACGA-AAGAAGGGGTGAAGCCAAACGAGGTCACTTATGT 1736
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1688 CTCGAAACATTCAACCAAATGA-TAGAAGAAGGGGTGAAGCCAAATGAGGTCACTTATGT 1746
Query 1737 TGCAATCTTATCAGCATGCAGCCATGTTGGTTTGGTCTCTGAAGGATGGAGACATTTCAA 1796
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1747 TGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTCCGAAGGATGGAGACATTTCAA 1806
Query 1797 TTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAGCACTATGCTTGTATGGTTGA 1856
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1807 TTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAACACTATGCTTGTATGGTTGA 1866
Query 1857 TCTTCTATGTCGAGCCGGGCTTCTCACAGATGCATTTGAGTTCATTAACACAATGCCCTT 1916
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1867 TCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGAGTTCATTAACACAATGCCCTT 1926
Query 1917 CCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACAC 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 CCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACAC 1986
Query 1977 AGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGC 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 AGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGC 2046
Query 2037 TTATATACAGCTCTCAAACATATACGCTAGTGCAGGGAAATGGGAAGAATCCACGGAGAT 2096
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2047 TTATATACAGCTCTCAAACATATACGCTTGTGCAGGGAAATGGGAAGAATCTACGGAGAT 2106
Query 2097 GAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGT 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 GAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGT 2166
Query 2157 GGGAGATAAGGTTCATAAGTTCTATGTAGGCGATACATCTCACCCGAATGCTCACCAAAT 2216
||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 2167 GGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATGCTCACCAAAT 2226
Query 2217 ATATGATGAATTGGACCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATAC 2276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 ATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATAC 2286
Query 2277 GGATCTTGTTCTTCACAAGCTAGAGGAAGAGGATGATGAGGCAAAGAAGGAGATGTTACT 2336
||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||
Sbjct 2287 GGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAGGTTACT 2346
Query 2337 GTATCAGCACAGTGAGAAAATTGCAGTTGCGTTTGGGCTTATAAGCACGGCGAAATCTAG 2396
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 2347 ATATCAGCACAGCGAGAAAATTGCGGTTGCGTTTGGGCTTATAAGCACGTCGAAATCTAG 2406
Query 2397 ACCG 2400
||||
Sbjct 2407 ACCG 2410
> AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase family
28 protein | chr3:18225379-18226805 REVERSE LENGTH=1192
Length=1192
Score = 652 bits (353), Expect = 0.0
Identities = 438/479 (91%), Gaps = 6/479 (1%)
Strand=Plus/Plus
Query 2866 GTGACTCTAATCAACACGCAATCCGCTATCCGAATCAAAACCGCTGTGGGGCGTGGCGGT 2925
||||| ||||||||||| ||||||||||||||||||||||||||| | || |||||||||
Sbjct 575 GTGACACTAATCAACACACAATCCGCTATCCGAATCAAAACCGCTATAGGACGTGGCGGT 634
Query 2926 TACGTTAAAAACATTTTCGCTAGGAGATTTACAATGAAGACAATGAAATACGTTTTCTGG 2985
||| | ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 635 TACATCAAAGACATTTTCGCTAGGAGATTTACGATGAAGACGATGAAATACGTTTTCTGG 694
Query 2986 ATGACCGGTTCGTATAAATTGCATCCCGTAGGCGGATTTGATCCTAAGGCGTTGCCGGAG 3045
||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 695 ATGACCGGTTCGTATAAGCTGCATCCCGTAGGCGGGTTTGATCCCAAGGCGTTGCCGGAG 754
Query 3046 ATTAGCAATATCAATTACCGTGACATGACGGCAGAAAACGTTACGATTTCGGCGAAGCTT 3105
|||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 755 ATTAGCAATATCCATTACCGTGACATGACCGCAGAAAACGTTACAATTTCGGCAAAGCTA 814
Query 3106 GAAGGGATCAAGAACGACCCTTTTACAGGTTTATGCATGTCCAATGTGACTATAGCTTTG 3165
||| |||||||||| | || ||||| |||||||||||||| | ||||||||||||||||
Sbjct 815 GAAAGGATCAAGAATGGTCCATTTACGGGTTTATGCATGTCGAGTGTGACTATAGCTTTG 874
Query 3166 TCACCGGACCCGAAGAAGCTGCAGTGGAACTGTACGGATGTCTCCGGAGTTACTAGTAGG 3225
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 875 TCGCCGGACCCGAAGAAGCTGCAGTGGAACTGCACGGATGTCTCCGGAGTTACTAGTAGG 934
Query 3226 GTTAAACCGGAGCCGTGCAGTTTGTTGCCGGATAAGGGAACTACGATGGA-T-----TGT 3279
|||| ||||||||||||||||||||| ||||||||| ||||||| ||||| | |||
Sbjct 935 GTTACACCGGAGCCGTGCAGTTTGTTACCGGATAAGAGAACTACAATGGACTCAGACTGT 994
Query 3280 GATTTTCCGACAGATAAGATTCCTATTGAGAGTGTTGTGTTGAACAAATGTTATGCTTA 3338
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GATTTTCCCACGGATAAGATTCCTATTGAGAGTGTTGTGTTGAACAAATGTTATGCTTA 1053
Score = 592 bits (320), Expect = 1e-167
Identities = 417/463 (90%), Gaps = 9/463 (2%)
Strand=Plus/Plus
Query 2401 ATGATTCAGACAAGTTTTTGGATATTTGTGTTATTAGCAATATCCGGTTTTTCGATTATG 2460
|||||||||||||||||| |||| | ||| |||||||||||||||||||| |||| |||
Sbjct 1 ATGATTCAGACAAGTTTTAAGATACTAGTGGTATTAGCAATATCCGGTTTTCCGATGATG 60
Query 2461 GAATCCCGCATTCAAAACAATGTGGGATCAACAAGCATTGAAAGCAATAAGGGGATTGAA 2520
|||||||| || |||| |||| |||||| ||| | |||||||||| | ||||||
Sbjct 61 GAATCCCGTATCCAAAGCAATTTGGGAT---CAA-C-----AAGCAATAAGAGTATTGAA 111
Query 2521 TATCTGGCGTTGAATTGTCGAAAACACAGAGCGGTTTTGACGGATTTTGGAGCTATTGGA 2580
||| |||| |||||||| || |||||||| |||||||||||| |||||||||||||||||
Sbjct 112 TATTTGGCTTTGAATTGCCGGAAACACAGTGCGGTTTTGACGAATTTTGGAGCTATTGGA 171
Query 2581 GATGGAAAAACCTCAAACACGAAAGCGTTTAGAGAAGCAATAACCAAGCTTACTACAAAG 2640
||||||||| |||||||||| ||||||||| |||||||||||| ||||||||| | |
Sbjct 172 GATGGAAAACCCTCAAACACCAAAGCGTTTCGAGAAGCAATAAGTAAGCTTACTCCGTTG 231
Query 2641 GCGGTTGACGGTGGAGTCCAACTCATTGTACCGCCGGGGAATTGGCTCACCGGAAGTTTC 2700
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 232 GCGGCTGACGGTGGAGTCCAACTCATTGTACCGCCGGGGAGTTGGCTCACCGGAAGTTTC 291
Query 2701 AACCTCACAAGCCATTTTACTTTGTTTATTCAGCAAGGTGCAACTATTCTTGCTTCTCAG 2760
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 AACCTCACAAGCCATTTTACTTTGTTTATCCAGCAAGGTGCAACTATTCTTGCTTCTCAG 351
Query 2761 GATGAATCTGAATATCCTATGATTCCGCCTTTGCCGTCATACGGAGAGGCAAGGTTTACT 2820
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 352 GATGAGTCTGAATATCCTATGATTCCACCTTTGCCGTCATACGGAGATGCAAGGTTTACT 411
Query 2821 AGTTTAATATACGGAAGTAACCTAACTGATGTTGTTATCACCG 2863
||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 412 GGTTTAGTATACGGAAGTAACCTAACCGATGTTGTTATCACCG 454
> AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:10174515-10176626 FORWARD LENGTH=1612
Length=1612
Score = 322 bits (174), Expect = 1e-86
Identities = 254/293 (87%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 2515 ATTGAATATCTGGCGTTGAATTGTCGAAAACACAGAGCGGTTTTGACGGATTTTGGAGCT 2574
||||||||| |||||||||||||||||||||| | || |||||||| || ||||||||
Sbjct 171 ATTGAATATATGGCGTTGAATTGTCGAAAACATACCGCAGTTTTGACAGAATTTGGAGC- 229
Query 2575 A-TTGGAGATGGAAAAACCTCAAACACGAAAGCGTTTAGAGAAGCAATAACCAAGCTTAC 2633
| |||| |||||||| ||||| ||||| |||||||| | |||||| |||||||||||| |
Sbjct 230 AGTTGGTGATGGAAAGACCTCGAACACAAAAGCGTTCAAAGAAGCCATAACCAAGCTTGC 289
Query 2634 TACAAAGGCGGTTGACGGTGGAGTCCAACTCATTGTACCGCCGGGGAATTGGCTCACCGG 2693
| ||||||| | ||||||||||| ||||||||||| || || || || ||||| |||||
Sbjct 290 TCCAAAGGCAGCCGACGGTGGAGTGCAACTCATTGTTCCACCAGGAAAATGGCTAACCGG 349
Query 2694 AAGTTTCAACCTCACAAGCCATTTTACTTTGTTTATTCAGCAAGGTGCAACTATTCTTGC 2753
||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 350 AAGTTTCAACCTCACCAGCCATTTTACTTTGTTCATCCAAAAAGGTGCAACTATTCTTGC 409
Query 2754 TTCTCAGGATGAATCTGAATATCCTA-TGATTCCGCCTTTGCCGTCATACGGA 2805
|||||||||||||||||||||||| | || || | |||||||| |||||||||
Sbjct 410 TTCTCAGGATGAATCTGAATATCC-AGTGGTTGCACCTTTGCCATCATACGGA 461
> AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22758063-22760192 FORWARD LENGTH=1547
Length=1547
Score = 104 bits (56), Expect = 6e-21
Identities = 133/169 (79%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 2646 TGACGGTGGAGTC-CAACTCATTGTA-CCGCCGGGGAATTGGCTCACCGGAAGTTTCAAC 2703
||| || |||| | || ||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 289 TGAAGGCGGAG-CACAGCTCTTTGTACCCGCC-GGGAAATGGCTCACCGGAAGTTTCAAC 346
Query 2704 CTCACAAGCCATTTTACTTTGTTTATTCAGCAAGGT-GCAACTATTCTTGCTTCTCAGGA 2762
|||||||||||||| ||| ||||| |||| ||| | |||| | |||| ||| |||| ||
Sbjct 347 CTCACAAGCCATTTCACTCTGTTTCTTCA-CAAAGACGCAATTCTTCTCGCTGCTCAAGA 405
Query 2763 -TGAATCTGAATATCCTATGATTCCGCCTTTGCCGTCATACGGA-GAGG 2809
| || | ||||| || || | | ||||||| || |||||| ||||
Sbjct 406 CTTAAAC-GAATACCCAATTCTAAAGGCTTTGCCTTCGTACGGACGAGG 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166152915216
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5