BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323521 Length=1074 Score E Sequences producing significant alignments: (Bits) Value AT3G49380.1 | Symbols: iqd15 | IQ-domain 15 | chr3:18311909-183... 1343 0.0 > AT3G49380.1 | Symbols: iqd15 | IQ-domain 15 | chr3:18311909-18313490 REVERSE LENGTH=1059 Length=1059 Score = 1343 bits (727), Expect = 0.0 Identities = 969/1082 (90%), Gaps = 31/1082 (3%) Strand=Plus/Plus Query 1 ATGGGGAAAACCGGCGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCACCG 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGGAAAACCGACGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCGCCG 60 Query 61 GAGAAGAAAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGAA 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 GAGAAGTTAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGTA 120 Query 121 GAGGACGAACAACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTCAAGAAAGAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 121 GAGGACGAACTACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTTAAGAAAGTT 180 Query 181 TCTTCTGATTTTTCTGCAATAGACGTAGGAATACACATAAGAAACTCCGGCAACATTAAC 240 ||||||||| || ||||||| ||||||| | || ||| | |||| || | Sbjct 181 TCTTCTGATCCTTGTGCAATAAACGTAGG-----A-AT---AAA---C-ACAAC-TT--C 224 Query 241 TCAACGGATGTTAACGCGATTGCGGCTGAGGAAACAGAGAAAACTGCATCTCCGGCGGCC 300 | |||| | ||||||||||||| || ||||||||||||||||||| || ||||||||| Sbjct 225 -C-ACGGCTATTAACGCGATTGCCGCGGAGGAAACAGAGAAAACTGTTTCGCCGGCGGCC 282 Query 301 AAGGAAACCGTCTTTTT-TGGCCGGATATCTGTCTACCTCAAA-AGACACTTGGCTGCTA 358 || |||||||| ||||| | | || | ||||||||||| ||| |||||| ||||||||| Sbjct 283 AAAGAAACCGTATTTTTCT-GTCGAACGTCTGTCTACCT-AAAGAGACACGTGGCTGCTA 340 Query 359 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCACGAACAGCGTTTAGGGCTCTACAAG 418 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 341 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCAAGAACAGCGGTTAGGGCTCTAAAAG 400 Query 419 GAGTTGTGAAACTACAAGCCTTAGTGAGAGGCCACATCGTGCGTAGACGAGCTAGCATTA 478 |||||||||||||||||||| ||||||||||||| | ||| |||||| || ||||||||| Sbjct 401 GAGTTGTGAAACTACAAGCCCTAGTGAGAGGCCATAACGTTCGTAGAAGAACTAGCATTA 460 Query 479 CTTTGCTTCGGGTTCAGGCTTTGGTTCAGATCCAGGCTCGAGCTCTAGAAT-ACC-GAAA 536 |||||| ||||| ||||||||||||| ||| ||||||| |||||||| || ||| |||| Sbjct 461 CTTTGCAACGGGTCCAGGCTTTGGTTCGGATTCAGGCTCTAGCTCTAG-ATCACCGGAAA 519 Query 537 AACACTCACCACCAATCTCGGCGACGAAACTGCCTTGTCTCATGCTTTCTCTAAACAGAT 596 || |||||| ||||| ||||| ||||||| | ||| ||||||||||||||||||||||| Sbjct 520 AA-ACTCACGACCAAGCTCGGGGACGAAATTTCCTACTCTCATGCTTTCTCTAAACAGAT 578 Query 597 GTGGAAAACTACAGCGAGAGAAGTTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 656 ||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 579 GTGGAGAACAATGGAAAGAGAAGCTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 638 Query 657 TAGATTAAACCGGTACGGTTACCAAGAAACCGGAAGAAGAATGTCAACCGATCAGGCTGT 716 |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| | Sbjct 639 TAGATTAAACGGGTACGGTTATCAAGAAACCGGAAGGAGAATGTCAACCGATCAGGCTAT 698 Query 717 CGTTGAACCGGTCAAGATAGTCGAGATCGATACGTATAA-AA--CGTACTCACACCACCA 773 |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| Sbjct 699 CGTTGAACCGGTCAAGATAGTCGAGATCGATAAGTATAATAATACGTACTCACACCACCA 758 Query 774 ACAGCTCAACGACCAGACGCCACGTGGACACT-CTTGCGTCACAAGGCAAGTCCATTCAA 832 ||| ||||||||||||||||||||||| || | ||| ||||||| |||||| |||||||| Sbjct 759 ACAACTCAACGACCAGACGCCACGTGG-CAATTCTTTCGTCACACGGCAAGCCCATTCAA 817 Query 833 TACCAAATTACATGTCTACCACTGCCTCAACCATGTCTAGATTTCGCCGGCCACAAAGCG 892 | |||||||||||||||||||||||||||||| || |||| || ||||| |||||||||| Sbjct 818 TTCCAAATTACATGTCTACCACTGCCTCAACCGTGGCTAGGTTCCGCCGACCACAAAGCG 877 Query 893 TACCAAAGCAGAGATCAAACCGAACCGGTTTAGATAACAACGAACCAAGATTAACATTGG 952 ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||| Sbjct 878 TACCAAAACAGAGATCAAACCGGACCTGTTTAGATAACAACGAACCAAGATTAAGATTGG 937 Query 953 TTAGAAAGCGGTTGTCATTTCACAATGGTAATCCGCAATCGCACGGTTATATTGCCGGTG 1012 |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 938 TTAGAAAGCGATTGTCATTTCACAATGATAATCCGCAATCGTACGGTTATATTGCCGGTG 997 Query 1013 ATGGTTACTTTTTGTACGACATCGACAAGAGAACCAATGCTCACGAAGATTTTCAGTATT 1072 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 998 ATGGTTACTTTTGGTACGACATCGACAAGAGAACGAATGCTCACGAAGATTTTCAGTACT 1057 Query 1073 AA 1074 || Sbjct 1058 AA 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52610171160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5