BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323521
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49380.1 | Symbols: iqd15 | IQ-domain 15 | chr3:18311909-183... 1343 0.0
> AT3G49380.1 | Symbols: iqd15 | IQ-domain 15 | chr3:18311909-18313490
REVERSE LENGTH=1059
Length=1059
Score = 1343 bits (727), Expect = 0.0
Identities = 969/1082 (90%), Gaps = 31/1082 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAAAACCGGCGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCACCG 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAAAACCGACGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCGCCG 60
Query 61 GAGAAGAAAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGAA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GAGAAGTTAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGTA 120
Query 121 GAGGACGAACAACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTCAAGAAAGAT 180
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 GAGGACGAACTACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTTAAGAAAGTT 180
Query 181 TCTTCTGATTTTTCTGCAATAGACGTAGGAATACACATAAGAAACTCCGGCAACATTAAC 240
||||||||| || ||||||| ||||||| | || ||| | |||| || |
Sbjct 181 TCTTCTGATCCTTGTGCAATAAACGTAGG-----A-AT---AAA---C-ACAAC-TT--C 224
Query 241 TCAACGGATGTTAACGCGATTGCGGCTGAGGAAACAGAGAAAACTGCATCTCCGGCGGCC 300
| |||| | ||||||||||||| || ||||||||||||||||||| || |||||||||
Sbjct 225 -C-ACGGCTATTAACGCGATTGCCGCGGAGGAAACAGAGAAAACTGTTTCGCCGGCGGCC 282
Query 301 AAGGAAACCGTCTTTTT-TGGCCGGATATCTGTCTACCTCAAA-AGACACTTGGCTGCTA 358
|| |||||||| ||||| | | || | ||||||||||| ||| |||||| |||||||||
Sbjct 283 AAAGAAACCGTATTTTTCT-GTCGAACGTCTGTCTACCT-AAAGAGACACGTGGCTGCTA 340
Query 359 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCACGAACAGCGTTTAGGGCTCTACAAG 418
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 341 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCAAGAACAGCGGTTAGGGCTCTAAAAG 400
Query 419 GAGTTGTGAAACTACAAGCCTTAGTGAGAGGCCACATCGTGCGTAGACGAGCTAGCATTA 478
|||||||||||||||||||| ||||||||||||| | ||| |||||| || |||||||||
Sbjct 401 GAGTTGTGAAACTACAAGCCCTAGTGAGAGGCCATAACGTTCGTAGAAGAACTAGCATTA 460
Query 479 CTTTGCTTCGGGTTCAGGCTTTGGTTCAGATCCAGGCTCGAGCTCTAGAAT-ACC-GAAA 536
|||||| ||||| ||||||||||||| ||| ||||||| |||||||| || ||| ||||
Sbjct 461 CTTTGCAACGGGTCCAGGCTTTGGTTCGGATTCAGGCTCTAGCTCTAG-ATCACCGGAAA 519
Query 537 AACACTCACCACCAATCTCGGCGACGAAACTGCCTTGTCTCATGCTTTCTCTAAACAGAT 596
|| |||||| ||||| ||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 520 AA-ACTCACGACCAAGCTCGGGGACGAAATTTCCTACTCTCATGCTTTCTCTAAACAGAT 578
Query 597 GTGGAAAACTACAGCGAGAGAAGTTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 656
||||| ||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 579 GTGGAGAACAATGGAAAGAGAAGCTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 638
Query 657 TAGATTAAACCGGTACGGTTACCAAGAAACCGGAAGAAGAATGTCAACCGATCAGGCTGT 716
|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 639 TAGATTAAACGGGTACGGTTATCAAGAAACCGGAAGGAGAATGTCAACCGATCAGGCTAT 698
Query 717 CGTTGAACCGGTCAAGATAGTCGAGATCGATACGTATAA-AA--CGTACTCACACCACCA 773
|||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||
Sbjct 699 CGTTGAACCGGTCAAGATAGTCGAGATCGATAAGTATAATAATACGTACTCACACCACCA 758
Query 774 ACAGCTCAACGACCAGACGCCACGTGGACACT-CTTGCGTCACAAGGCAAGTCCATTCAA 832
||| ||||||||||||||||||||||| || | ||| ||||||| |||||| ||||||||
Sbjct 759 ACAACTCAACGACCAGACGCCACGTGG-CAATTCTTTCGTCACACGGCAAGCCCATTCAA 817
Query 833 TACCAAATTACATGTCTACCACTGCCTCAACCATGTCTAGATTTCGCCGGCCACAAAGCG 892
| |||||||||||||||||||||||||||||| || |||| || ||||| ||||||||||
Sbjct 818 TTCCAAATTACATGTCTACCACTGCCTCAACCGTGGCTAGGTTCCGCCGACCACAAAGCG 877
Query 893 TACCAAAGCAGAGATCAAACCGAACCGGTTTAGATAACAACGAACCAAGATTAACATTGG 952
||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 878 TACCAAAACAGAGATCAAACCGGACCTGTTTAGATAACAACGAACCAAGATTAAGATTGG 937
Query 953 TTAGAAAGCGGTTGTCATTTCACAATGGTAATCCGCAATCGCACGGTTATATTGCCGGTG 1012
|||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 938 TTAGAAAGCGATTGTCATTTCACAATGATAATCCGCAATCGTACGGTTATATTGCCGGTG 997
Query 1013 ATGGTTACTTTTTGTACGACATCGACAAGAGAACCAATGCTCACGAAGATTTTCAGTATT 1072
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 998 ATGGTTACTTTTGGTACGACATCGACAAGAGAACGAATGCTCACGAAGATTTTCAGTACT 1057
Query 1073 AA 1074
||
Sbjct 1058 AA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5