BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323531
Length=3594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA pol... 5653 0.0
AT2G05370.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 279 9e-74
> AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase
6 | chr3:18349161-18353624 REVERSE LENGTH=3786
Length=3786
Score = 5653 bits (3061), Expect = 0.0
Identities = 3421/3598 (95%), Gaps = 11/3598 (0%)
Strand=Plus/Plus
Query 1 ATGGGGTCAGAGGGAAGTATGAAGAACTCGGTTGTGACACAAGTAAGCATTGGTGGATTT 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 164 ATGGGGTCAGAGGGAAATATGAAGAAGTCGGTTGTGACACAAGTAAGCATTGGTGGATTT 223
Query 61 GGAGAGTCCACTACTGCTAAACAACTTACAGATTACCTTGAAGATGAAGTAGGACTTGTT 120
|| || ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 224 GGGGAATCCACTACTGCAAAACAACTCACAGATTACCTTGAAGATGAAGTAGGAATTGTT 283
Query 121 TGGCGATGCAGATTAAAAACTTCTTGGACTCCTCCTGGCTCTTATCCTAATTTTGAAATC 180
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 284 TGGCGTTGCAGATTAAAAACTTCGTGGACTCCTCCTGGGTCTTATCCTAATTTTGAAATC 343
Query 181 GCAGACACTTCAAGTATCCCCAAAT-TTGATGATTACAAGAAAGTGGAGCCTCATGCGTT 239
||||||||||||| ||||||| | | ||||||| || |||||||||||||||||||| ||
Sbjct 344 GCAGACACTTCAAATATCCCC-AGTATTGATGAATATAAGAAAGTGGAGCCTCATGCCTT 402
Query 240 TGTCCATTTCGCAGTTCCTGAATCAGCAGCTCGTGCCATGGATGCTGCGGGGCAATGCAA 299
|||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||
Sbjct 403 TGTCCATTTCGCAGTTTTTGAATCAGCTGGTCGTGCCATGGATGCTGCAGGGCAATGCAA 462
Query 300 CCTCATCCTGGATGGCCAGCCGTTAAAAGTCAGCTTGGGGCCTAAGAACCCTTACACCCT 359
||||||| ||||||||||||||||||||||||| ||||| |||||||| || || ||||
Sbjct 463 CCTCATCTTGGATGGCCAGCCGTTAAAAGTCAGTTTGGGTCCTAAGAATCCATATTCCCT 522
Query 360 TAACCAGAGAAGAAGAACGACCACACCGTATAAGTTGGCTGGTATTTCACTTGAGATTGG 419
||| || |||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 523 TAATCAAAGAAGAAGAACGACTGTACCTTATAAGTTGGCTGGTATTACACTTGAGATTGG 582
Query 420 GACCTTGGTTTC-CAGGGATGAGTTTCTTGTTTCTTGGAGAGCTGACGGGGTTGATTTCC 478
||| |||||||| | ||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 583 GACATTGGTTTCTC-GGGATGATTTTTTTGTTTCTTGGAGAGCTGAAGGGGTTGATTTCC 641
Query 479 TGGTGGATCCTTTTGACAACACTTGCAAGTTTTGCTTCAGAAAGAGCACTGCGTTTTCTT 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 642 TGGTGGATCCTTTTGACAACACGTGCAAGTTTTGTTTCAGAAAGAGCACTGCCTTCTCTT 701
Query 539 TCAAGGATGCAGTGATGCATGCTGTGATCAATTGTGATTATAAGCTGGAGTTATTGGTGA 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 702 TCAAGGATGCAGTGATGCATGCTGTGATCAATTGTGATTATAAGTTGGAGTTATTGGTGA 761
Query 599 GAGATATACAAACAGTCAGGCAGTATAAAAACTCGCATGGCTATGTACTTATTTTGCAGC 658
|||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||
Sbjct 762 GAGATATACAAACAGTCAGGCAGTATAAAACCTTGCATGGCTTTGTGCTTATTTTGCAGC 821
Query 659 TGGCTTCGTCACCCCGTGTCTGGTACAGAACTGCTGATGATGATATTCACGATACTATCC 718
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 822 TGGCTTCTTCACCCCGTGTCTGGTACAGAACTGCTGATGATGATATTTACGATACTGTCC 881
Query 719 CTGTCGATCTCTTGGATGATGATGACCCTTGGATCCGTACCACTGATTTTACCCAAGTTG 778
||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 882 CTGGCGATCTCTTGGATGATGATGATCCTTGGATCCGTACCACTGATTTTACTCAAGTTG 941
Query 779 GGGCAATTGGTCGATGCCATTCATATCGAGTGCTCATATCTCCGCGGTATGAAAAGAAAC 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 GGGCAATTGGTCGATGTCATTCATATCGAGTGCTCATATCTCCGCGGTATGAAAATAAAC 1001
Query 839 TGACAACAGCCTTAGATTATCTAAGGATGCGGAGGGTGCAAGAGGAACGTGTGAAGTGGC 898
||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 1002 TGAGAACAGCCTTAGATTATTTTAGGATGCGGAGGGTGCAAGAGGAACGTGTGAGGTGGC 1061
Query 899 CTCCCCGGATCCGTAATGAGCCCAGTTTTGGGGAGCTTGTGTCAGATCATTTCTTCTGCA 958
||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1062 CTCCCCGTATCCGTAATGAGCCTTGTTTTGGGGAGCCTGTGTCAGATCATTTCTTCTGCA 1121
Query 959 TTCATCACAAGGAAGGAATCTCCTTTGAGATCATGTTCCTAGTAAATTCGGTATTGCACA 1018
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1122 TTCATCACAAGGAAGGAATCTCTTTTGAGATCATGTTTCTAGTAAATTCGGTATTGCACA 1181
Query 1019 GGGGGGTTTTTAACCAGTTTCAGCTGACTGAGCGTTTCTTTGATCTTCTCAGAAACCAGC 1078
|||| || ||||||||||||||| |||||||||| |||||||||||||| |||||||| |
Sbjct 1182 GGGGTGTCTTTAACCAGTTTCAGTTGACTGAGCGATTCTTTGATCTTCTAAGAAACCAAC 1241
Query 1079 CCAAGGACGTCAATATAGCTTCTCTCAAGCATCTCTGTACCTATAAACGACCAGTTTTTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CCAAGGACGTCAATATAGCTTCTCTCAAGCATCTCTGTACCTATAAACGACCAGTTTTTG 1301
Query 1139 ATGCGTACAAGAGGTTGAAGCTTGTTCAGGAATGGATTCTGAAAAATCCAAAGCTTTTAG 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1302 ATGCGTACAAGAGGTTGAAGCTTGTTCAGGAATGGATTCAGAAAAATCCAAAGCTTTTAG 1361
Query 1199 GGGGTCATGAACAGTCTGAGGATATCTCTGAGATCAGAAGGCTAGTGATTACCCCAACCA 1258
|| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1362 GGAGTCATGAACAATCTGAGGATATCTCTGAGATCAGAAGACTAGTAATTACCCCAACCA 1421
Query 1259 GAGCCTATTGCCTACCCCCAGAAGTTGAGCTCTCCAACAGGGTACTCAGGAAATACAAAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 GAGCCTATTGCCTACCCCCAGAAGTTGAGCTCTCCAACAGGGTACTCAGGAGATACAAAG 1481
Query 1319 CTGTTGCTGAAAGATTTTTGCGCGTAACTTTCATGGACGAAAGTATGCAGACCATAAATT 1378
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1482 CTGTTGCTGAAAGATTTTTGCGGGTAACTTTCATGGATGAAAGTATGCAGACCATAAATT 1541
Query 1379 CGAATGTTCTCTCTTACTTTGTTGCTCCTATTGTGAAGGATCTGACATCAAGCTCTTTCT 1438
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1542 CGAATGTTCTCTCTTACTTTGTTGCTCCTATTGTGAAGGATTTGACATCAAGTTCTTTCT 1601
Query 1439 CCCAGAAGACCTACGTTTTTAAAAGAGTGAAGAGCATATTAACCGATGGGTTTAATCTAT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1602 CCCAGAAGACCTACGTTTTTAAAAGAGTGAAGAGCATATTAACCGATGGGTTTAAACTAT 1661
Query 1499 GTGGTAGAAAATACAGTTTTCTAGCATTCTCAGCCAATCAACTGAGAGACAGCTCTGCAT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1662 GTGGTAGAAAATACAGTTTTCTAGCATTCTCAGCCAATCAACTGAGAGACCGCTCTGCAT 1721
Query 1559 GGTTCTTTGCTGAAGACGGGAAAACACGAGTGTCAGATATAAAAACATGGATGGGGAAGT 1618
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1722 GGTTCTTTGCTGAAGACGGGAAAACACGTGTGTCAGATATAAAAACATGGATGGGGAAGT 1781
Query 1619 TCAAAGACAAGAATGTGGCAAAATGTGCTGCTAGGATGGGCCTGTGCTTCTCCTCCACAT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 TCAAAGACAAGAATGTGGCAAAATGTGCTGCTAGGATGGGCCTGTGCTTCTCCTCCACAT 1841
Query 1679 ATGCCACTGTAGATGTCATGCCTCACGAGGTTGACACCGAGCTTCCAGACATTGAGAGAA 1738
||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct 1842 ATGCCACTGTAGATGTCATGCCTCACGAGGTTGACACTGAGGTTCCAGATATTGAGAGAA 1901
Query 1739 ATGGGTATGTTTTCTCTGATGGAATTGGTACAATCACACCTGACCTCGCTGACGAAGTAA 1798
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 ATGGGTATGTTTTCTCTGACGGAATTGGTACAATCACACCTGACCTCGCTGACGAAGTAA 1961
Query 1799 TGGAGAAACTTAAGTTGGATCTCCACTGTACCCCTTGTGCTTATCAGATACGTTACGCAG 1858
|||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||
Sbjct 1962 TGGAGAAACTTAAGTTGGATGTGCACTACAGCCCTTGTGCTTATCAGATACGTTACGCAG 2021
Query 1859 GTTTCAAAGGAGTTGTTGCTCGTTGGCCATCAAAAGGTGATGGAATCAGGCTAGCCCTTC 1918
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2022 GTTTCAAAGGGGTTGTTGCTCGTTGGCCATCAAAAAGTGATGGAATCAGGCTAGCCCTTC 2081
Query 1919 GAGATAGTATGAAGAAGTTCAATTCCAAACATACCATCTTGGAGATCTGTTCCTGGACGA 1978
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2082 GAGACAGTATGAAGAAGTTCTTTTCCAAACATACGATCTTGGAGATCTGTTCCTGGACGA 2141
Query 1979 GGTTTCAACCTGGATTCTTAAATCGGCAGATAATTACCCTCCTTTCTGTACTAGGTGTGC 2038
||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct 2142 GGTTTCAACCTGGGTTCTTAAATCGGCAGATAATTACCCTTCTATCCGTACTAGGTGTTC 2201
Query 2039 CGGATGAAATATTTTGGGATATGCAGGAATCCATGCTCTATAAACTGAACCGCATCCTTG 2098
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 CGGATGAAATATTCTGGGATATGCAGGAATCCATGCTCTATAAACTGAACCGCATCCTTG 2261
Query 2099 ATGATACAGATGTGGCATTTGAAGTTCTCACAGCATCATGTGCTGAACAGGGAAACACTG 2158
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2262 ATGATACAGATGTGGCATTTGAAGTTCTCACGGCATCATGTGCTGAACAGGGAAACACTG 2321
Query 2159 CAGCTATCATGCTAAGTGCAGGTTTCAAACCAAAAACTGAGCCACATCTACGCGGAATGT 2218
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 2322 CAGCTATCATGCTTAGTGCAGGTTTCAAACCAAAAACCGAGCCGCATCTACGCGGGATGT 2381
Query 2219 TGTCTTCAGTCAGAATTGCGCAACTCTGGGGTCTTAGAGAAAAATCTCGTATTTTTGTTA 2278
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2382 TGTCTTCAGTCAGAATTGCACAACTCTGGGGTCTCAGAGAAAAATCTCGTATTTTTGTTA 2441
Query 2279 CTTCAGGAAGGTGGCTAATGGGTTGCCTAGACGAAGCAGGGATACTTGAACATGGCCAAT 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 CTTCAGGAAGGTGGCTAATGGGTTGCCTAGACGAAGCAGGGATACTTGAACATGGCCAAT 2501
Query 2339 GCTTTATCCAAGTCTCTAAACCGTCTATAGAAAATTGTTTCTCCAAACATGGGTCTCGTT 2398
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 GCTTTATTCAAGTCTCTAAACCGTCTATAGAAAATTGTTTCTCCAAACATGGGTCTCGTT 2561
Query 2399 TTAAGGAGACAAAGACAGATCTGGAAGTAGTTAAAGGCTATGTAGCTATTGCTAAGAATC 2458
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2562 TTAAGGAGACAAAGACAGATCTGGAAGTAGTTAAAGGCTATGTAGCCATTGCTAAGAATC 2621
Query 2459 CTTGTCTTCACCCAGGGGATGTAAGGATTTTAGAAGCTGTTGATGTACCCCAGCTGCATC 2518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2622 CTTGTCTTCACCCAGGGGATGTAAGGATTTTAGAAGCTGTTGATGTACCCCAGCTGCATC 2681
Query 2519 ACATGTATGACTGCCTTATTTTCCC-CAAGAAAGGTGATAGGCCCCATACAAACGAAGCT 2577
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 2682 ACATGTATGACTGCCTTATTTTCCCTC-AGAAAGGTGATAGGCCGCATACAAACGAAGCT 2740
Query 2578 TCTGGTAGTGACCTTGACGGGGACCTGTACTTTGTGGCTTGGGATCAGAAACTCATCCCT 2637
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2741 TCTGGCAGTGACCTTGACGGGGACCTGTACTTTGTGGCTTGGGATCAGAAACTCATCCCT 2800
Query 2638 CCCAACaaaaaaaGCTATCCGGCCATGCATTATGATGCCGCTGAAGAGAAGAGTTTAGGC 2697
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2801 CCCAACAGGAAAAGCTATCCGGCCATGCATTATGATGCAGCTGAAGAGAAGAGTTTAGGC 2860
Query 2698 CGTGCTGTCAACCACCAGGATATAATTGATTTCTTTGCAAGAAACATGGCGAATGAGCAT 2757
|||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 2861 CGTGCTGTCAACCACCAGGACATAATCGATTTCTTTGCAAGAAACTTGGCGAATGAGCAG 2920
Query 2758 TTGGGCACAATTTGTAATGCACATGTCGTTCATGCTGATAGAAGTGACTATGGAGCCATG 2817
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2921 TTGGGCACAATTTGCAATGCACACGTCGTTCATGCTGATAGAAGTGAGTATGGAGCCATG 2980
Query 2818 GACGAAGAATGTTTGCTACTGGCAGAACTAGCTGCCACTGCAGTTGATTTCCCAAAGACA 2877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2981 GACGAAGAATGTTTGCTACTGGCAGAACTAGCTGCCACTGCAGTTGATTTCCCAAAGACA 3040
Query 2878 GGGAAAATTGTGTCAATGCCCTTCCACCTAAAACCAAAACTCTACCCAGATTTCATGGGA 2937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3041 GGGAAAATTGTGTCAATGCCCTTCCACCTAAAACCAAAACTCTACCCAGATTTCATGGGA 3100
Query 2938 AAAGAAGACTACCAAACTTACAAGTCGAACAAAATCTTGGGCCGGCTTTACAGGCGGGTA 2997
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3101 AAAGAAGACTACCAAACTTACAAGTCGAACAAAATCTTGGGTCGGCTTTACAGACGGGTA 3160
Query 2998 AAAGAAGTTTACGATGAAGATGCAGAAGCTTCCTCAGAAGAAAGCTCAGACCCAAGTGAC 3057
||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 3161 AAAGAGGTTTATGATGAAGATGCAGAAGCTTCCTCAGAAGAAAGCACAGACCCAAGTGCC 3220
Query 3058 ATCCCTTATGACATTGATCTTGAAATACCAGGATTTGAAGATTTGATCCCCGAGGCATGG 3117
|||||||||||| || |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 3221 ATCCCTTATGACGCTGTTCTTGAAATACCGGGATTTGAAGATTTGATCCCTGAGGCATGG 3280
Query 3118 GGGCACAAATGTTTTTACGACAGGCAGCTCATTGGTCTTCTCGGGCAATACAAGGTCCAG 3177
|| ||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||
Sbjct 3281 GGTCACAAATGTTTGTACGACGGGCAACTCATTGGTCTTCTTGGGCAATACAAGGTGCAG 3340
Query 3178 AAAGAGGAGGAGATTGTGACGGGTCATATCTGGTCTATGCCTAAATACACAAGTAAGAAA 3237
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 3341 AAAGAGGAAGAGATTGTGACGGGTCACATCTGGTCCATGCCCAAATACACAAGCAAGAAA 3400
Query 3238 CAAGGCGAACTGAAAGAAAGACTGAAGCATTCTTACAATTCCCTGAAAAAAGAGTTCAGA 3297
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 3401 CAAGGCGAACTGAAAGAAAGACTGAAGCATTCTTATAATTCCCTTAAAAAGGAGTTCAGG 3460
Query 3298 AAAGTATTTGAGGAAACAATCC-TGGACCACGAAGAGCTCAGCGAAGAGGAAAAGAACAT 3356
|||||||||||||||||||||| || |||| ||| | |||||||| |||||||| |||||
Sbjct 3461 AAAGTATTTGAGGAAACAATCCCTG-ACCATGAAAATCTCAGCGAGGAGGAAAAAAACAT 3519
Query 3357 TTTGTATGAGAAGAAGGCTTCAGCTTGGTATCATGTCACTTACCATCCCAAGTGGGTGAA 3416
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3520 CTTGTATGAGAAGAAGGCTTCAGCTTGGTATCATGTAACTTACCATCCCGAGTGGGTGAA 3579
Query 3417 GAAGTCTTTAGAGCTGCAAGATCCAGATGAGCCGTCTAGTCATGCGGTGATGCTGAGTTT 3476
||||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||
Sbjct 3580 GAAGTCTTTAGAGCTGCAAGATCCAGATGAGTC--C-AGTCATGCGGCGATGCTGAGTTT 3636
Query 3477 TGCTTGGATTGCAGCTGATTATCTTGCAAGAATCAAAATCCGGTCAGGGGAAATGGGAAA 3536
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3637 TGCTTGGATTGCAGCTGATTATCTTGCAAGAATCAAAATCCGGTCACGGGAAATGGGAAG 3696
Query 3537 TATCGACTCAGCCAAGCCTGTTGATTCTTTGGCCAAGTTTCTTGCTCAACGTCTCTAA 3594
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 3697 TATCGACTCAGCCAAGCCTGTTGATTCTTTGGCTAAGTTTCTTGCTCAGCGTCTCTAA 3754
> AT2G05370.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1);
Has 65 Blast hits to 37 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1960413-1961425
REVERSE LENGTH=636
Length=636
Score = 279 bits (151), Expect = 9e-74
Identities = 287/351 (82%), Gaps = 16/351 (5%)
Strand=Plus/Plus
Query 19 ATGAAGAACTCGGTTGTGACACAAGTAAGCATTGGTGGATTTGGAGAGTCCACTACTGCT 78
|||||||||| ||||||| ||||||||| ||| |||| ||||| ||||| |||| |
Sbjct 1 ATGAAGAACTTGGTTGTGTCACAAGTAACCATAAGTGGGTTTGGGGAGTCAACTAAAACA 60
Query 79 AAACAACTTACAGATTACCTTGAAGATGAAGTAGGACT--T-GTTTGGCGATGCAGATTA 135
||| ||||||||||||| |||||| | |||||||||| | ||||||||||||||||||
Sbjct 61 AAAGAACTTACAGATTATCTTGAAAACAAAGTAGGACTACTCGTTTGGCGATGCAGATTA 120
Query 136 AAAACTTCTTGGACTCCTCCTGGCTCTTATCCTAATTTTGAAATCGCAGACACTTCAAGT 195
||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||
Sbjct 121 AAAACTTCTTGGACTCCTCATGGGTCTTATCCTAATTTTGAGATCATAGACACTTCAAAC 180
Query 196 ATCCCCAAATTTGAT-GATTACAAGAAAGTGGAGCCTCATGCGTTTGTCCATTTCGCAGT 254
||||||||||||||| | |||| ||| ||||| ||||||||| |||||||||| || | |
Sbjct 181 ATCCCCAAATTTGATTG-TTACGAGAGAGTGGTGCCTCATGCATTTGTCCATTGCG-A-T 237
Query 255 TCCTGAATCAGCAGCTCGTGCCATGGATGCTGCGGGGCAATGCAACCTCATCCT-GGATG 313
|| | | | | || | ||||||||||| | ||||| ||| |||||||| || ||
Sbjct 238 GCCC-A-TAA--ATCTT-TA--ATGGATGCTGCAGAGCAATCCAAACTCATCCTCGG-TG 289
Query 314 GCCAGCCGTTAAAAGTCAGCTTGGGGCCTAAGAACCCTTACACCCTTAACC 364
||||||| |||||| |||||||| | || ||||||| || || |||||||
Sbjct 290 GCCAGCCATTAAAATTCAGCTTGTCGTCTGAGAACCCATATACACTTAACC 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 178945485681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5