BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323545
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49640.1 | Symbols: | Aldolase-type TIM barrel family prote... 1668 0.0
AT3G49645.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 446 4e-124
> AT3G49640.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:18400306-18402869 REVERSE LENGTH=1224
Length=1224
Score = 1668 bits (903), Expect = 0.0
Identities = 1003/1051 (95%), Gaps = 8/1051 (1%)
Strand=Plus/Plus
Query 589 GGCGTCTTCGAATTTTTCGTGGCTGCGTTTGACGTTGCCAC------GAAGAAGACGAAG 642
|||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 1 GGCGTCTTCGAATTTTTCGTGGCTACGTTTGACGGTGCCACGAAGAAGAAGAAGACGAAG 60
Query 643 ATGGATTACCAGAACAAGCATGTCCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 702
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 120
Query 703 AGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACAGTGAAGAGATTATCGATCAT 762
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 121 AGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACGGTGAAGAGATTATTGATCAT 180
Query 763 AAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATGGGACAACTGAGTTTGTGGAG 822
|||||||||||||||||||| ||| | || ||||||| ||||||| ||||||||||||||
Sbjct 181 AAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTGGGACATCTGAGTTTGTGGAG 240
Query 823 AAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAGAGAGAAA-TAGAGTTGTTTT 881
||||||||||| ||||| ||||||||||||||| | ||||| | ||| ||| ||||||||
Sbjct 241 AAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGA-AAAAAGTAGGGTTGTTTT 299
Query 882 TCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCTGCTGAGATTGTGTGCAACGA 941
||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||
Sbjct 300 TCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTGTGTAATGA 359
Query 942 CGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCGTTCTCTATCCAAGGAGGAAT 1001
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 360 CGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATTCTCTATCCAAGGTGGAAT 419
Query 1002 GGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGATATTTTGGCAACACTTAAGAG 1061
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 420 GGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGATATTTTGGCAACACTTAAGAG 479
Query 1062 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTTTATTAAAATCACCAGCAGATACTGT 1121
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTCTATTAAAATCACCAGCAGATACTGT 539
Query 1122 TGAATTGGCTAGGAGAATCGAGAAGCTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 1181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TGAATTGGCTAGGAGAATCGAGAAACTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 599
Query 1182 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 659
Query 1242 ATTATCTATTCCCGTCATTGCAAATGGCGATGTTTTAGAATACGATGATTTTTCTCGCAT 1301
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 ATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCAT 719
Query 1302 TAAAACTGCAACAGGCGCTGCATCAGTGATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 1361
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TAAAACCGCAACAGGCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 779
Query 1362 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 839
Query 1422 GAGCATCTTGTGGAATAACGATGTCAAGAGCACGAAATACACGATAAAGGAGATGATAGC 1481
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GAGCATCTTGTGGAATAACGATGTTAAGAGCACGAAATACACGATAAAGGAGATGATAGC 899
Query 1482 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAGAGCAGACACTTTAGA 1541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAAAGCAGACACTTTAGA 959
Query 1542 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1019
Query 1602 ACTGACACATGACTTAAATCATGTTTTATGA 1632
|||||||||| ||||||| ||||||||||||
Sbjct 1020 ACTGACACATAACTTAAACCATGTTTTATGA 1050
> AT3G49645.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18403002-18404788
REVERSE LENGTH=892
Length=892
Score = 446 bits (241), Expect = 4e-124
Identities = 284/305 (93%), Gaps = 1/305 (0%)
Strand=Plus/Plus
Query 285 AGCCAAAAGCTTGTTAATTGAGCTGGAGCATCTCACTGATGAGGCCGCTCTTGCAATTGA 344
|||||||| |||||| ||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 414 AGCCAAAAACTTGTTGATTGAGCTGGAACGTCTCACTGATGAGGCCGCCCTTGCAATTGA 473
Query 345 GTCTGCCACGCAGCTAGATAAAGACTCAAGTAATGAATTGCGACAAGTTACGTGTGATGA 404
||||||||| ||||||||||||||||||||| ||| ||||| |||||| || ||||||||
Sbjct 474 GTCTGCCACACAGCTAGATAAAGACTCAAGTGATGGATTGCAACAAGTAACATGTGATGA 533
Query 405 GGAGAACGGGACTGCACAATTACCTCAAGGACCTGAAGTTACAGAGTACGCTGCACTTAT 464
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGAGAACGAGACTGTACAATTACCTCAAGGACCTGAAGTTACAGAGTACGCTGCACTTAT 593
Query 465 CGCAGTAATTTACAATATGATGAAGCAGAACTATGCGATGCAGGAAAAGATTGTGAGATC 524
||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 594 TGCAGTTATTTACAGTATGATGAAGCAGAACTATGTTATGCAGGATAAGATTGTGAGATC 653
Query 525 GCTTAGTTTGAAGTCATCATCTGGTGAGCTAGAGAGTTACAGTCTGATGTGGTCATTGCG 584
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 GCTTAGTTTGAAGTCATCATCTGGTGAGCTAGAGACTTACAGTCTGATGTGGTCATTGCG 713
Query 585 TCCCG 589
||||
Sbjct 714 -CCCG 717
Score = 390 bits (211), Expect = 2e-107
Identities = 252/272 (93%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACTAGAATCA-AACAGAAGAAGAAAATATCCGAGATTTTCAAAGATTTTATGAC 59
|||||||| ||||| | ||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct 103 ATGGAAACGAGAAT-AGAACTGAAGAAGAAAATTTCCGAGATTTTCAAAGACTTTATGAC 161
Query 60 AGGAATCACACAGCTTGAGGAACTAGGGAATGCTGCAAACAACTTTCTTCTTCGGTTTCA 119
|| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 162 AGTAATCACGCAGCTTGAAGAACTAGGGAATGCTGCAAACAACTTTCTTCTACGGTTTCA 221
Query 120 GCAAGGACTAAGTTTTCTTCAACGCCCTCCAATGGTTACTTCGTCTAAGTTGATGGAGAA 179
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 222 GCAAGGACTAAGTTTTCTTCAACGCCCTCCAATAGTTACTTCGTCCAAGTTGATTGAGAA 281
Query 180 CATTATCAAGAAGAATGAAACTCGACGGCTTAAATCATATATGGAAGCAGGATGTATTAA 239
||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||
Sbjct 282 CATTATCAAGAAGAATGAAACAAGGCGGCTTAAATCATATATCGAGGCAGGATGTATTAA 341
Query 240 TATCCATGATGCGGCACAAAGTACAAGAGCTT 271
|||||||||||| |||||||| ||||||||||
Sbjct 342 TATCCATGATGCTGCACAAAGCACAAGAGCTT 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5