BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323549 Length=1491 Score E Sequences producing significant alignments: (Bits) Value AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases ... 902 0.0 > AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001030-23004321 REVERSE LENGTH=1938 Length=1938 Score = 902 bits (488), Expect = 0.0 Identities = 614/674 (91%), Gaps = 11/674 (2%) Strand=Plus/Plus Query 393 ATGGGAGTGCAACAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 452 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 ATGGGAGTTCAGCAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 762 Query 453 TCACTTTGCATTCGCCACGAAAGCAGAAGCAGATGAAGAGCTCCTCCAAATTTTGGAGCT 512 |||| |||||||||||| ||||||||||||||||||||| |||| |||||||||||||| Sbjct 763 TCACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCT 822 Query 513 TTTCCGTCGCATATATGAAGAATTTCTTGCAGTCCCAGTTGTGAAGGGT-TGGAAAAGTG 571 || |||||||||||||||||||| ||||||||| ||||||||||| ||| || || |||| Sbjct 823 TTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATG-AAGAGTG 881 Query 572 AACATGAGAAATTTGCTGGGGGACTTTACACTACAAGTGTAGAGATTTTCATTCCAAACA 631 || ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 882 AAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGGCTTTCATTCCAAACA 941 Query 632 CTGGTCGTGGTGTACAAGGGGCAACCTC-CAATTGTTTGGGTCAGAACTTTGCAAAGACG 690 ||||||||||||||||||| |||||||| || ||||||||| || |||||||| |||| | Sbjct 942 CTGGTCGTGGTGTACAAGGTGCAACCTCTCA-TTGTTTGGGACAAAACTTTGCGAAGATG 1000 Query 691 TATGAGATCAACTATGTGGATGAGAAAGGAGAGACAGCAACGGTGTGGCAGAATTCTTGG 750 | ||||||||||| || | ||||||||| |||||||| || ||||||||||||||||||| Sbjct 1001 TTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGG 1060 Query 751 ACCTACAGTACCAGGACGATTGGAGTGATGATTATGA-TCCATGGAGATGACAAGGGCTT 809 |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| | Sbjct 1061 GCCTACAGTACCAGGACGATTGGAGTGATGATTATGACTC-ATGGAGATGACAAAGGCCT 1119 Query 810 GATACTCCCCCCTAAAGTCGCACCTCTGCAAGTTGTTGTAAT-CGCTGTGCCCTGCAAAA 868 | ||||||| |||||||||||| || ||||||||||||| || | |||| |||| |||| Sbjct 1120 GGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTC-CTGTTCCCTACAAAG 1178 Query 869 ATGCTAATATCCAAAGAATTTATGATGCTTGTACTGCTACAGTATCTGCCTTGTGTGAAG 928 ||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1179 ATGCTAATACCCAAGGAATTTATGATGCTTGTACTGCTACTGCATCTGCCTTGTGTGAAG 1238 Query 929 CCGGTATCCGTGCTGAAGAAGATTTAAGGGATGAA-TACACTCCTGGATGGAAGTATTCA 987 ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 1239 CCGGTATCCGTGCTGAAGAAGATTTAAGGGAC-AACTACTCTCCTGGATGGAAGTATTCA 1297 Query 988 GACTGGGAAATGAAGGGCGTTCCATTGAGGATTGAAATTGGTCCCAGAGACCTGGAAAAT 1047 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1298 GACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAAT 1357 Query 1048 GATCAGGTCATGAA 1061 |||||||||| ||| Sbjct 1358 GATCAGGTCA-GAA 1370 Score = 582 bits (315), Expect = 3e-165 Identities = 358/379 (94%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 1114 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTT 1173 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTC 1423 Query 1174 GAAAATGTTAAGGAACTGCTTGAGAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAA 1233 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1424 GAACATGTTAAGGAACTGCTTGAAAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAA 1483 Query 1234 AAGAGGGAAGCGTGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAATCTTTTAAC 1293 ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1484 AAGAGGGAAGCATGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAAC 1543 Query 1294 GAAAAGAAATTCATCTTAGCTCCCTGGTGTGATGAAGTGGAAGTGGAGAGAGATGT-ACA 1352 ||||||||| |||| || ||||||||||||||||||| ||||||||| |||||||| | | Sbjct 1544 GAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTA-A 1602 Query 1353 GGCACGTACTAAAGGTGAAACTGGAGCAGCTAAAACCCTTTGTTCTCCACTGGATCAGCC 1412 ||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 1603 GGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCC 1662 Query 1413 AGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTA 1472 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1663 TGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTA 1722 Query 1473 TTGGGGCAGGAGTTACTAA 1491 ||||||||||||||||||| Sbjct 1723 TTGGGGCAGGAGTTACTAA 1741 Score = 412 bits (223), Expect = 4e-114 Identities = 323/371 (87%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 24 TAAGAAAAATGAGAATTTC-AGCAAGTGGTATTTTGAGGTTTGTAAACGAGACATGATTG 82 ||||||| ||||||| ||| | || ||||||| |||||||||||||| ||| ||||||| Sbjct 304 TAAGAAAGATGAGAACTTCGGGGAA-TGGTATTCTGAGGTTTGTAAACAAGATATGATTG 362 Query 83 AGTACTTCAATATCTCTGGATGTTATTTTCCTA-GGCCATTGACCATGGCCATTTGGGAG 141 |||||| | ||||||||||||||||| || ||| |||||| | | ||||||||||||||| Sbjct 363 AGTACTACGATATCTCTGGATGTTATATT-CTACGGCCATGGTCAATGGCCATTTGGGAG 421 Query 142 ATAATGCAAATTTTCTTTGATGCGGAAATGAAGAAAATGAAGGTCGTAAAGAATTGGGAT 201 || |||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 422 ATTATGCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTC---AAGAATTGCTAT 478 Query 202 TTCCCTCTGTTTGTACCTCCTGGTGTCTTAGAGAAGGAAAATGAACATATTGAAGGATTC 261 ||||||||||||||| |||||||||||||||| ||||| || || || || || |||||| Sbjct 479 TTCCCTCTGTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTC 538 Query 262 GCGCCAGAGGTTGGGTGGGTTACAAAGTCAATTAAATCTGACTTGGAAGTCCCAATTGCT 321 || || ||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 539 GCCCCTGAGGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCT 598 Query 322 ACTCGTCCAACTAGTGAGACTGTTTTGTACACTTACTTTAGCAAGTGGGTAAAGGGGTAC 381 | ||||||||| |||||||| || ||||| |||||| ||||||||| ||| |||| || Sbjct 599 ATTCGTCCAACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCAC 658 Query 382 CGTGACTTGCC 392 ||||||||||| Sbjct 659 CGTGACTTGCC 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73543798425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5