BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323549
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases ... 902 0.0
> AT3G62120.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr3:23001030-23004321 REVERSE LENGTH=1938
Length=1938
Score = 902 bits (488), Expect = 0.0
Identities = 614/674 (91%), Gaps = 11/674 (2%)
Strand=Plus/Plus
Query 393 ATGGGAGTGCAACAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 452
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATGGGAGTTCAGCAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 762
Query 453 TCACTTTGCATTCGCCACGAAAGCAGAAGCAGATGAAGAGCTCCTCCAAATTTTGGAGCT 512
|||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 763 TCACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCT 822
Query 513 TTTCCGTCGCATATATGAAGAATTTCTTGCAGTCCCAGTTGTGAAGGGT-TGGAAAAGTG 571
|| |||||||||||||||||||| ||||||||| ||||||||||| ||| || || ||||
Sbjct 823 TTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATG-AAGAGTG 881
Query 572 AACATGAGAAATTTGCTGGGGGACTTTACACTACAAGTGTAGAGATTTTCATTCCAAACA 631
|| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 882 AAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGGCTTTCATTCCAAACA 941
Query 632 CTGGTCGTGGTGTACAAGGGGCAACCTC-CAATTGTTTGGGTCAGAACTTTGCAAAGACG 690
||||||||||||||||||| |||||||| || ||||||||| || |||||||| |||| |
Sbjct 942 CTGGTCGTGGTGTACAAGGTGCAACCTCTCA-TTGTTTGGGACAAAACTTTGCGAAGATG 1000
Query 691 TATGAGATCAACTATGTGGATGAGAAAGGAGAGACAGCAACGGTGTGGCAGAATTCTTGG 750
| ||||||||||| || | ||||||||| |||||||| || |||||||||||||||||||
Sbjct 1001 TTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGG 1060
Query 751 ACCTACAGTACCAGGACGATTGGAGTGATGATTATGA-TCCATGGAGATGACAAGGGCTT 809
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
Sbjct 1061 GCCTACAGTACCAGGACGATTGGAGTGATGATTATGACTC-ATGGAGATGACAAAGGCCT 1119
Query 810 GATACTCCCCCCTAAAGTCGCACCTCTGCAAGTTGTTGTAAT-CGCTGTGCCCTGCAAAA 868
| ||||||| |||||||||||| || ||||||||||||| || | |||| |||| ||||
Sbjct 1120 GGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTC-CTGTTCCCTACAAAG 1178
Query 869 ATGCTAATATCCAAAGAATTTATGATGCTTGTACTGCTACAGTATCTGCCTTGTGTGAAG 928
||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1179 ATGCTAATACCCAAGGAATTTATGATGCTTGTACTGCTACTGCATCTGCCTTGTGTGAAG 1238
Query 929 CCGGTATCCGTGCTGAAGAAGATTTAAGGGATGAA-TACACTCCTGGATGGAAGTATTCA 987
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1239 CCGGTATCCGTGCTGAAGAAGATTTAAGGGAC-AACTACTCTCCTGGATGGAAGTATTCA 1297
Query 988 GACTGGGAAATGAAGGGCGTTCCATTGAGGATTGAAATTGGTCCCAGAGACCTGGAAAAT 1047
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1298 GACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAAT 1357
Query 1048 GATCAGGTCATGAA 1061
|||||||||| |||
Sbjct 1358 GATCAGGTCA-GAA 1370
Score = 582 bits (315), Expect = 3e-165
Identities = 358/379 (94%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 1114 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTC 1423
Query 1174 GAAAATGTTAAGGAACTGCTTGAGAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAA 1233
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1424 GAACATGTTAAGGAACTGCTTGAAAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAA 1483
Query 1234 AAGAGGGAAGCGTGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAATCTTTTAAC 1293
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1484 AAGAGGGAAGCATGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAAC 1543
Query 1294 GAAAAGAAATTCATCTTAGCTCCCTGGTGTGATGAAGTGGAAGTGGAGAGAGATGT-ACA 1352
||||||||| |||| || ||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 1544 GAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTA-A 1602
Query 1353 GGCACGTACTAAAGGTGAAACTGGAGCAGCTAAAACCCTTTGTTCTCCACTGGATCAGCC 1412
||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1603 GGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCC 1662
Query 1413 AGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTA 1472
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1663 TGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTA 1722
Query 1473 TTGGGGCAGGAGTTACTAA 1491
|||||||||||||||||||
Sbjct 1723 TTGGGGCAGGAGTTACTAA 1741
Score = 412 bits (223), Expect = 4e-114
Identities = 323/371 (87%), Gaps = 7/371 (2%)
Strand=Plus/Plus
Query 24 TAAGAAAAATGAGAATTTC-AGCAAGTGGTATTTTGAGGTTTGTAAACGAGACATGATTG 82
||||||| ||||||| ||| | || ||||||| |||||||||||||| ||| |||||||
Sbjct 304 TAAGAAAGATGAGAACTTCGGGGAA-TGGTATTCTGAGGTTTGTAAACAAGATATGATTG 362
Query 83 AGTACTTCAATATCTCTGGATGTTATTTTCCTA-GGCCATTGACCATGGCCATTTGGGAG 141
|||||| | ||||||||||||||||| || ||| |||||| | | |||||||||||||||
Sbjct 363 AGTACTACGATATCTCTGGATGTTATATT-CTACGGCCATGGTCAATGGCCATTTGGGAG 421
Query 142 ATAATGCAAATTTTCTTTGATGCGGAAATGAAGAAAATGAAGGTCGTAAAGAATTGGGAT 201
|| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 422 ATTATGCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTC---AAGAATTGCTAT 478
Query 202 TTCCCTCTGTTTGTACCTCCTGGTGTCTTAGAGAAGGAAAATGAACATATTGAAGGATTC 261
||||||||||||||| |||||||||||||||| ||||| || || || || || ||||||
Sbjct 479 TTCCCTCTGTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTC 538
Query 262 GCGCCAGAGGTTGGGTGGGTTACAAAGTCAATTAAATCTGACTTGGAAGTCCCAATTGCT 321
|| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GCCCCTGAGGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCT 598
Query 322 ACTCGTCCAACTAGTGAGACTGTTTTGTACACTTACTTTAGCAAGTGGGTAAAGGGGTAC 381
| ||||||||| |||||||| || ||||| |||||| ||||||||| ||| |||| ||
Sbjct 599 ATTCGTCCAACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCAC 658
Query 382 CGTGACTTGCC 392
|||||||||||
Sbjct 659 CGTGACTTGCC 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5