BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323555
Length=3567
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2889 0.0
AT3G49725.1 | Symbols: | GTP-binding protein, HflX | chr3:1844... 1875 0.0
AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1570 0.0
> AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18445730-18447646 REVERSE LENGTH=1917
Length=1917
Score = 2889 bits (1564), Expect = 0.0
Identities = 1794/1904 (94%), Gaps = 20/1904 (1%)
Strand=Plus/Plus
Query 1 ATGCGTAGATTCTCTACCATTGTCGATCTTCTTCTCATCAGCAAAAAACCATCTTCTCAA 60
||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 1 ATGCGTAGATTCTCTACCATTGTTGA---TCTTCTCATCAGCAAAAAACCA---TCT--- 51
Query 61 TCTCAAGCAAATTCTCGAATTGATCTCATTTGTAAAAGGTTTCACATTTCAAGAGTTCTC 120
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 52 TCTCAAGCAAATTCTAGAATTGATCTCATTTGTAAAAGGTTCCATATTTCAAGAGTTCTC 111
Query 121 AATAACGATTTCGTGGAATCAACAGAGAGAAAGAATGGGCTTGGTTTAGTTTTTCCAGAG 180
|||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 112 AATAACGATTTCGTAGAATCAACAGAGAGAAAGAATGGGGTTGGTTTAGTTTGTCCAGAG 171
Query 181 AAGCATGAGGATGAATTCGCCGGTGACGTTGAGAAGATATACAGAATTTTGCGGAATCAC 240
|||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 172 AAGCATGAAGATGAATTCGCCGGTGAAGTCGAGAAGATTTACAGAATTTTGCGGAATCAC 231
Query 241 CATTCTAGGGTTCCGAAATTGGAGCTTGCTCTTAACGAATCAGGTATTGATCTACGACCC 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 232 CATTCTAGAGTTCCAAAATTGGAGCTTGCTCTTAACGAATCAGGTATTGATCTGCGACCC 291
Query 301 GGGTTAATCGTACGAGTGTTGAGTCGGTGTGGAGATGCTGGGAATTTAGGTTATAGATTT 360
||||| ||| |||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 292 GGGTTGATCATACGAGTGTTGAGTCGTTGTGGCGATGCTGGGAATCTAGGTTATAGATTC 351
Query 361 TTTCTATGGGCAACGAAGCAACCTGGGTATTGTCATAGCTATGAAGTGTGTAAATCAATG 420
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 352 TTTCTGTGGGCAACGAAGCAACCTGGTTATTTTCATAGCTATGAAGTGTGTAAATCAATG 411
Query 421 GTGATGATTCTTAGTAAAATGCGGCAATTTGGAGCTGTTTGGGGTTTAATTGAAGAGATG 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 412 GTGATGATTCTTAGTAAAATGCGACAATTTGGAGCTGTTTGGGGTTTAATTGAAGAGATG 471
Query 481 AGGAAGGA-GAATCCAGAGTTGATTGAGCCAGAGTTGTTCGTTGTATTGATACGGAGGTT 539
||||| || |||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 472 AGGAA-GACGAATCCGGAGTTGATTGAGCCGGAGTTGTTCGTTGTATTGATGCGGAGGTT 530
Query 540 TGCTTCTGCTAATATGGTGAAGAAAGCAGTTGAGGTGCTCGACGAAATGCCTAAGTATGG 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGCTTCTGCTAACATGGTGAAGAAAGCAGTTGAGGTGCTCGACGAAATGCCTAAGTATGG 590
Query 600 TTTTGAGCCTGACGAGTATGTTTTTGGATGTTTGTTAGATGCTTTGTGTAAGAACGGTAG 659
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 GTTAGAGCCTGACGAGTATGTTTTTGGTTGTTTGTTAGATGCTTTGTGTAAGAACGGTAG 650
Query 660 TGTTAAGGATGCTTCAAAGGTTTTTGAGGATATGAGAGAGAAGTTTCCTCCGAATTTACG 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 651 TGTTAAGGAGGCTTCAAAGGTTTTTGAGGATATGAGAGAGAAGTTTCCTCCGAATTTGCG 710
Query 720 GTATTTCACTTCGTTGTTGTATGGTTGGTGTAGGGAAGGGAAGTTGATGGAAGCTAAGGA 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 GTATTTTACTTCGTTGTTGTATGGTTGGTGTAGGGAAGGGAAGTTGATGGAAGCTAAAGA 770
Query 780 AGTTTTGGTTCAGATGAAGGAAGCTGGGCTTGAGCCTGACATTGTGGTTTTCACTAACTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGTTTTGGTTCAGATGAAGGAAGCTGGGCTTGAGCCTGACATTGTGGTTTTCACTAACTT 830
Query 840 GCTTAGTGGATATGCTCATGCTGGGAAAATGGCGGATGCTTATGATCTTATGAATGATAT 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 ACTTAGTGGATATGCTCATGCTGGGAAAATGGCGGATGCGTATGATCTTATGAATGATAT 890
Query 900 GAGAAAAAGAGGGTATGAGCCGAATGCGAATTGTTACACGGTTTTGATCCAGGCGTTGTG 959
|||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 891 GAGAAAGAGAGGGTTTGAGCCGAATGTGAATTGTTACACGGTTTTGATCCAGGCGTTGTG 950
Query 960 TAGGACGGAGAAGAGAATGGATGAGGCGATGAGGGTTTTTGTTGAGATGGAAAGGTATGG 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 951 TAGGACGGAGAAGAGAATGGATGAGGCGATGCGGGTTTTTGTTGAGATGGAGAGGTATGG 1010
Query 1020 ATGTGAGGCTGATATTGTGACTTACACCGCGCTGATAAGCGGGTTTTGCAAGTGGGGAAT 1079
|||||||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||
Sbjct 1011 ATGTGAGGCTGATATTGTGACTTATACCGCGTTGATAAGTGGGTTTTGTAAATGGGGAAT 1070
Query 1080 GATCGATAAGGGTTATAGTGTTTTAGATGATATGAGAAAGAAAGGAGTTATACCGTCGCA 1139
||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1071 GATTGATAAAGGTTATAGTGTTTTAGATGATATGAGAAAGAAAGGAGTCATGCCGTCGCA 1130
Query 1140 AGTATCATATATGCAGATAATGGTGGCTCATGAGAAGAAAGAACAATTTGAAGAGTGTTT 1199
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGTAACATATATGCAGATAATGGTGGCTCATGAGAAGAAAGAACAATTTGAAGAGTGTTT 1190
Query 1200 GGAGTTGATTGAGAAGATGAAGCAAATAGGTTGTCATCCCGATCTTCTCATTTACAATGT 1259
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 1191 GGAGTTGATTGAGAAGATGAAGCGAAGAGGTTGTCATCCTGATCTTCTCATTTACAATGT 1250
Query 1260 AGTGATCAGATTGGCTTGTAACTTTAGGG-AAGTGAAAGAAGCAGTTCGGTTATGGAACG 1318
|||||| |||||||||||||| || |||| ||||||||||||| ||||||||||||||||
Sbjct 1251 AGTGATAAGATTGGCTTGTAAGTT-AGGGGAAGTGAAAGAAGCTGTTCGGTTATGGAACG 1309
Query 1319 AAATGGAAGCTAATGGTTTAAGTCCTGGAGTTGACATGTTTGTTATTATGATCAACGGAT 1378
|||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||
Sbjct 1310 AAATGGAAGCTAATGGGCTAAGCCCTGGAGTTGATACGTTTGTTATTATGATCAACGGAT 1369
Query 1379 TTACTAGCCAAGGTTATC-TAATCGAAGCCTGCAATCACTTCAAAGAAATGGTAAGCCGA 1437
|||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1370 TTACAAGCCAAGGTT-TCCTAATCGAAGCCTGTAATCACTTCAAAGAAATGGTAAGCCGA 1428
Query 1438 GGATTATTCTCTGCGCCTCAATATGGAACGCTGAAGTCATTGCTAAATA-CTCTTCTAAG 1496
||| |||||||||||||||||||||||||||||||||||||||| |||| | ||| | ||
Sbjct 1429 GGAATATTCTCTGCGCCTCAATATGGAACGCTGAAGTCATTGCTTAATAAC-CTTGTTAG 1487
Query 1497 AGATGATAAGCTTGAAATGGCGAAAGATGTATGGAGTTGCTTATCAAACAAAACCTCTTC 1556
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1488 AGATGATAAGCTCGAAATGGCGAAAGATGTATGGAGTTGCATATCCAACAAAACCTCTTC 1547
Query 1557 TTGTGAGCTGAATGTATCAGCTTGGACAATATGGATCCATGCTTTGTTCGCAAAAGGTCA 1616
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1548 CTGTGAGCTGAATGTATCAGCTTGGACAATATGGATCCATGCTTTGTACGCAAAAGGTCA 1607
Query 1617 CGTGAAGGAAGCATGTTCGTATTGTCTTGATATGATGGAGATGGACTTGATGCCGCAACC 1676
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1608 CGTGAAGGAAGCGTGTTCGTATTGTCTTGATATGATGGAGATGGATTTGATGCCGCAACC 1667
Query 1677 TAATACTTACGCGAAACTTATGAAAGGATTGCATAAACTGTATAACAGGACGATCGCTGC 1736
||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1668 TAATACTTATGCGAAACTTATGAAAGGATTGAATAAACTGTATAATAGGACGATCGCTGC 1727
Query 1737 AGAGATTACAGAGAAGGTGATGAAGATGGCGAGTGAGAGAGAGATGAGTTTTAAAATGTA 1796
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1728 AGAGATTACAGAGAAGGTGGTGAAGATGGCAAGTGAGAGAGAGATGAGTTTTAAGATGTA 1787
Query 1797 TAAGAAGAGAGGTGAGGAGGATTTGATTGAGAAAGCTAAACCTAAAGGTAATAATAAAGA 1856
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1788 TAAGAAGAAAGGTGAGGAGGATTTGATTGAGAAAGCTAAACCTAAAGGGAATAA-A--GA 1844
Query 1857 AGGGAAGAAGAAAGGAACAGATCATCATAGGCATAAAGGAGGAG 1900
||| ||||||||||| ||||||||||| ||| |||| ||| |||
Sbjct 1845 AGGAAAGAAGAAAGGGACAGATCATCAAAGGTATAAGGGAAGAG 1888
> AT3G49725.1 | Symbols: | GTP-binding protein, HflX | chr3:18442275-18445457
REVERSE LENGTH=2096
Length=2096
Score = 1875 bits (1015), Expect = 0.0
Identities = 1211/1300 (93%), Gaps = 36/1300 (3%)
Strand=Plus/Plus
Query 2286 AGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACTGCTATTCAACAACGGAATTTAGA 2345
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 642 AGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGA 701
Query 2346 GCGAATATGGGCAAAACCTGTAC-TAGACCGTGTAGGCCTTATAATTGAAATATTTAATG 2404
||||||||||||||||||||| | |||||||||| || |||||||| |||||||||||||
Sbjct 702 GCGAATATGGGCAAAACCTGT-CTTAGACCGTGTGGGTCTTATAATCGAAATATTTAATG 760
Query 2405 CTCATGCGCATACAAAGGAAGCAAAACTACAGGCAGAGTTAGCAGCTCTGATGTACAATA 2464
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 761 CTCATGCGCATACAAAGGAAGCAAAACTACAGGCTGAGTTAGCTGCTTTGATGTACAATA 820
Query 2465 AGAGCAGGCTGGTTCGAGTGCGTGGTACTGATGGACGCCACACATTTGGGCAGTTTGGAG 2524
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 821 AGAGCAGACTGGTTCGAGTGCGTGGTACTGATGGACGCCATACTTTTGGGCAGTTTGGAG 880
Query 2525 AAGCTGAAGTTGTCAGTGCCCGAGGGAGAGCAGGAAGCAAGGGAACCGGCGGCGGTTTTG 2584
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 881 AAGCTGAAGTTGTCAGTGCCCGAGGGAGAGCAGGAAGCAAGGGAACCGGTGGCGGTTTTG 940
Query 2585 TAGGTGGTGCAGGAGAAACTGAGCTTCAGCTTCAACGCCGAAGAATATCAGATCGGAGGC 2644
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 941 TAGGTGGTGCAGGAGAAACTGAGCTTCAGCTTCAACGCCGAAGAATATCAGACCGGAGGA 1000
Query 2645 TTCGCTTGTTATCCCAAATTAAAGAAGCCCAGCGAACACGGCTATTGCAGCGTGCTGGAC 2704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTCGCTTGTTATCCCAAATTAAAGAAGCCCAGCGAACACGGCTATTGCAGCGTGCTGGAC 1060
Query 2705 GTAAGAAAAGAGTGGGGTTAGAGGGTGAGAGTTCAGGTACCATTGCTGTTGTTGGTTACA 2764
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1061 GTAAGAAAAGAGTGGGGTTAGAGGGTGAGAGTTCAGGAACCATTGCTGTTGTTGGTTACA 1120
Query 2765 CAAATGCTGGAAAATCGACTCTGATAAGTGCATTAACAAAGACTGCTCTCTACTGCAATG 2824
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1121 CAAATGCTGGAAAATCGACTCTGATAAGTGCACTAACAAAGACTGCTCTCTACTGCAATG 1180
Query 2825 AGCGATTGTTTGCCACATTAGATCCTACACTTAAGAGTGCCCATCTTCCTTCTGGAAACT 2884
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1181 AGCGATTGTTTGCCACATTAGATCCTACACTCAAGAGTGCCCATCTTCCTTCTGGAAACT 1240
Query 2885 TTGTGCTTCTTAGTGACACTGTTGGATTCATATCAGATCTGCCTATACAGCTGGTGAAAG 2944
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1241 TTGTGCTTCTTAGTGACACTGTCGGATTCATATCAGATCTGCCTATACAGCTGGTGAAAG 1300
Query 2945 CATTTCAATCGACTCTGGAAGAAGTTGTTGAAGCTGATATACTTCTGCATGTAGTTGATT 3004
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1301 CTTTTCAATCGACTCTGGAAGAAGTTGTTGAAGCTGATCTACTTCTGCATGTAGTTGATT 1360
Query 3005 CGACAGCTCCAAATATCGAGGAGCATCGTTCAACAGTGTTTCATATCCTTAAGCAAATTG 3064
| |||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||
Sbjct 1361 CAACAGCTCCAAATATCGAGGAGCATCGTTCAACAGTGCTTCATGTCCTAAATCAAATTG 1420
Query 3065 GAGTATCTGAAGAGAAGCTTCAAAATATGATTGAAGTCTGGAATAAGATTGATTATgaag 3124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GAGTACCTGAAGAGAAGCTTCAAAATATGATTGAAGTCTGGAATAAGATTGATTATGAAG 1480
Query 3125 aagaagaagaagtgggggacgcgaaatatctagatgatggcgaaggag-a--agaagaag 3181
|||| |||| ||| ||| | |||||||||||||||||||||||||| | ||||||||
Sbjct 1481 AAGACGAAG---TGGAGGAAGAGAAATATCTAGATGATGGCGAAGGAGTAGGAGAAGAAG 1537
Query 3182 a--a-g-C-----TGATTTAAAAGCTGAAGAAACTGTTGATGCATCT-ATAGCAGCAGTT 3231
| | | | |||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 1538 ACGAAGACGAAGCTGATTTAAAAGCTGAAGAAACTGTTGATGCATCTGA-AGCAACAGT- 1595
Query 3232 A-ATGAAGACCAAATCCAAAACCAAGACAATGACT-C--TGATGGGTGGCTATTGTCTGA 3287
| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||
Sbjct 1596 AGATGAAGACCAAATCCAAAACGGAGACGGTGACGACGCTGATGGGTGGCTATTGTCTGA 1655
Query 3288 AGATGAAAATGCTGACGACTTTGAGCTCTGGAAGGTTCCAGAAGTTGCTAAACTAGATGC 3347
||||||||||||||||||| |||| ||||||| ||||| |||||||||||| |||||||
Sbjct 1656 AGATGAAAATGCTGACGACCCTGAGTTCTGGAAAGTTCCGGAAGTTGCTAAAGTAGATGC 1715
Query 3348 TGCACAGAAGAAAGGACCAGATGTTAGAGTTTCTGCATTAACCGGAGTTGGTTTGAAGGA 3407
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 TGCAAATAAGAAAGGACCAGATGTTAGAGTTTCTGCATTAACCGGAGTTGGTTTGAAGGA 1775
Query 3408 GTTGCTGTATCTTATTGATGACAAAATGAAAGTTGAAGAAGAGAAGAAGCTCAAGTCTCA 3467
|||||||||||||||||||||||||||||||| | ||||| | | ||||||||||
Sbjct 1776 GTTGCTGTATCTTATTGATGACAAAATGAAAG---A-GAAGA-A-G---CTCAAGTCTCC 1826
Query 3468 GACAATAGTCGAAAGGAGTGATCTTCATAAGCGTAAATGGCGACCACCTCGTAAAGATGA 3527
||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||
Sbjct 1827 GACTATAGTCGAAAGGAGTGAGCTTCATAAGCGTAAATGGAGGCCACCTCGTAACGATGA 1886
Query 3528 TGATGAAGAGGTGAGAGTAATCCCGTTAGATCAACGGTGA 3567
||| | |||| |||| ||||||||||||||||||| |||
Sbjct 1887 TGA--A-GAGGAGAGATTAATCCCGTTAGATCAACGTTGA 1923
Score = 599 bits (324), Expect = 6e-170
Identities = 370/392 (94%), Gaps = 4/392 (1%)
Strand=Plus/Plus
Query 1899 AGTGTCTCTTGCTCGGAACCGTCTTAGGTCCGAAACGCCATCATCGTTTCTTGCTCGGA- 1957
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 186 AGTGTCTCTTGCTCGGAACCGTCTTAGGTCGGAAACGCCATCATCTTTTCTTGCTC-GAG 244
Query 1958 ACCATCTTAGGTCTAAAACGCCATCATCGTCTCCGTTTTCTTCGAAGCGGCATGCGCCTA 2017
||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 245 ACCGTCTTAGGTCAAAAACGCCATCATCGTCTCCATTTTCTTCGAAGCGGCATACGCCTA 304
Query 2018 AAACGAGCGAAGTAGAAGAAGAGTCGACTCCAAAAGATTCAGTTTTGTTAAACCCTAAAG 2077
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AGACAAGCGAAATAGAAGAAGAGTCGACTCCAAAAGATTCAGTTTTGTTAAACCCTAAAG 364
Query 2078 ATCCATCAAGCCCACCTAAGCTCTTCCTTGTTCAGCCTCGTCTAGCACCGCCTAAGTTA- 2136
|||| |||||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||
Sbjct 365 ATCCTTCAAGCGCACCTAAGCTCTTCCTTGTACAGCCTCGTTTAGCACCGCCAAAG-TAT 423
Query 2137 CTACAGGCGAAGCTGAATGAAGCGCTTTGTCTCGCGAATTCGCTTGAAGAGCAACGATAT 2196
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CTACAAGCGAAGCTGAACGAAGCGCTTTGTCTCGCGAATTCGCTTGAAGAGCAACGATAT 483
Query 2197 GGGTACTTTGAATCTGATTTCTTCGACAAGGAATTGCCTTCTCATGTTGTTGTTCAAAAC 2256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 484 GGGTACTTTGAATCTGATTTCTTTGACAAGGAATTGCCTTCTCATGTTGTTGTTCAAAAC 543
Query 2257 CCTGTTCGTAGATCGTCTAAACCTCGCGTAGA 2288
||||| ||||||||||||||||||||||||||
Sbjct 544 CCTGTCCGTAGATCGTCTAAACCTCGCGTAGA 575
> AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:26339876-26341789 REVERSE LENGTH=1914
Length=1914
Score = 1570 bits (850), Expect = 0.0
Identities = 1434/1709 (84%), Gaps = 67/1709 (4%)
Strand=Plus/Plus
Query 190 GATGAATTCGCCG-GTGACGTTGAGAAGAT-ATACAGAATTTTGCGG-AATCACCATTCT 246
|||||||||| || |||| || ||||| || |||||||||| ||||| ||| ||||||
Sbjct 229 GATGAATTCG-CGAGTGATGTCGAGAA-ATCATACAGAATTCTGCGGAAAT-TTCATTCT 285
Query 247 AGGGTTCCGAAATTGGAGCTTGCTCTTAACGAATCAGGTATTGATCTACGACCCGGGTTA 306
||||||||||| ||||| || || ||||||||||| ||| |||| || ||||||||||||
Sbjct 286 AGGGTTCCGAAGTTGGAACTCGCGCTTAACGAATCCGGTGTTGAACTCCGACCCGGGTTA 345
Query 307 ATCGTACGAGTGTTGAGTCGGTGTGGAGATGCTGGGAATTTAGGTTATAGATTTTTTC-T 365
|||| ||| || |||| ||| |||||||||||||||||| ||||||| ||| || ||| |
Sbjct 346 ATCGAACGGGTTTTGAATCGTTGTGGAGATGCTGGGAATCTAGGTTACAGA-TTCTTCGT 404
Query 366 ATGGGCAACGAAGCAACCTGGGTATTGTCATAGCTAT-GAAGTGTGTAAATCAATGGTGA 424
||||| ||||||||||| | |||||||| || ||| ||||||| ||| ||||||||||
Sbjct 405 CTGGGCGGCGAAGCAACCTCGTTATTGTCACAG-TATCGAAGTGTATAAGTCAATGGTGA 463
Query 425 TGATTCTTAGTAAAATGCGGCAATTTGGAGCTGTTTGGGGTTTAATTGAAGAGATGAGGA 484
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 464 AGATTCTTAGTAAAATGCGTCAATTTGGAGCTGTTTGGGGTTTAATTGAAGAAATGAGGA 523
Query 485 AGGAGAATCCAG-AGTTGATTGAGCCAGAGTTGTTCGTTGTATTGATACGGAGGTTTGCT 543
|||||||||| | |||||||||| || || ||||| || || ||| | | ||| |||||
Sbjct 524 AGGAGAATCC-GCAGTTGATTGAACCGGAATTGTTTGTGGTTTTGGTTCAGAGATTTGCG 582
Query 544 TCTGCTAATATGGTGAAGAAAGC-AGTTGAGGTGCTCGACGAAATGCCTAAGTAT-GGTT 601
||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||
Sbjct 583 TCTGCGGATATGGTGAAGAAAGCCA-TTGAGGTGCTCGACGAAATGCCTAAGT-TCGGTT 640
Query 602 TTGAGCCTGACGAGTATGTTTTTGGATGTTTGTTAGATGCTTTGTGTAAGAACGGTAGTG 661
||||||| || |||||||| || || |||||| ||||||| ||||||||| |||||||||
Sbjct 641 TTGAGCCAGATGAGTATGTATTCGGGTGTTTGCTAGATGCATTGTGTAAGCACGGTAGTG 700
Query 662 TTAAGGATGCTTCAAAGGTTTTTGAGGATATGAGAGA-GAAGTTTCCTCCGAATTTACGG 720
||||||||||| ||||| ||||||||||||||||| | | |||||| |||||| |||
Sbjct 701 TTAAGGATGCTGCAAAGCTTTTTGAGGATATGAGA-ATGCGGTTTCCGGTGAATTTGCGG 759
Query 721 TATTTCACTTCGTTGTTGTATGGTTGGTGTAGGGAAGGGAAGTTGATGGAAGCTAAGGAA 780
||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
Sbjct 760 TATTTTACTTCGTTGTTGTATGGTTGGTGCAGGGTAGGGAAGATGATGGAAGCTAAATAT 819
Query 781 GTTTTGGTTCAGATGAAGGAAGCTGGGCTTGAGCCTGACATTGTGGTTTTCACTAACTTG 840
||||||||||| ||||| ||||||||| ||||||| |||||||| | || ||||||||||
Sbjct 820 GTTTTGGTTCAAATGAACGAAGCTGGGTTTGAGCCAGACATTGTTGATTACACTAACTTG 879
Query 841 CTTAGTGGATATGCTCATGCTGGGAAAATGGCGGATGCTTATGATCTTATGA-ATGATAT 899
|| |||||||||||| ||||||| |||||||| ||||||||||||||| ||| | |||||
Sbjct 880 CTAAGTGGATATGCTAATGCTGGTAAAATGGCAGATGCTTATGATCTTTTGAGA-GATAT 938
Query 900 GAGAAAAAGAGGGTATGAGCCGAATGCGAATTGTTACACGGTTTTGATCCAGGCGTTGTG 959
||||| |||||| | ||| ||||||||||| ||||||||||||||||| || || |||||
Sbjct 939 GAGAAGAAGAGGCTTTGAACCGAATGCGAACTGTTACACGGTTTTGATTCAAGCATTGTG 998
Query 960 TAGGACGG-AGAAGAGAATGGATGAGGCGATGAGGGTTTTTGTTGAGATGGAAAGGTATG 1018
|| | || ||| |||||||| ||||| |||| ||| |||||||||||||| |||||||
Sbjct 999 TA--A-GGTAGAT-AGAATGGAGGAGGCAATGAAGGTATTTGTTGAGATGGAGAGGTATG 1054
Query 1019 GATGTGAGGCTGATATTGTGACTTACACCGCGCT-GATAAGCGGGTTTTGCAAGTGGGGA 1077
||||||||||||| ||||||||||||| || | | || | ||||||||||| ||||||
Sbjct 1055 AATGTGAGGCTGATGTTGTGACTTACACTGCATTAGTTA-GTGGGTTTTGCAAATGGGGA 1113
Query 1078 ATGATCGATAAGGGTTATAGTGTTTTAGATGATATGAGAAAGAAAGGAGTT-ATACCGTC 1136
| ||||||||| |||||| ||||||||| ||||||| ||| ||||| | | || |||||
Sbjct 1114 AAGATCGATAAATGTTATATTGTTTTAGACGATATGATAAAAAAAGG-GCTCATGCCGTC 1172
Query 1137 -GCAAGT-ATCATATATGCAGATAATGGTGGCTCATGAGAAGAAAGAACAATTT-GAAGA 1193
| || | | | |||||||| ||||||||||||||||||||||| ||| | ||| |||||
Sbjct 1173 TG-AACTCACC-TATATGCATATAATGGTGGCTCATGAGAAGAAGGAA-AGTTTTGAAGA 1229
Query 1194 GTGTTTGGAGTTGATTGAGAAGATGAAGCAAATAG-GTTGTCATCCCGATCTTCTCATTT 1252
|||||||||| |||| |||||||||| |||||||| || |||||| ||| || |||||
Sbjct 1230 GTGTTTGGAGCTGATGGAGAAGATGAGGCAAATAGAGTA-TCATCCTGATATTGGCATTT 1288
Query 1253 ACAATGTAGTGATCAGATTGGCTTGTAACTTTAGG-GAAGTGAAAG-AAGCAGTTCGGTT 1310
||||||| || ||||||||||||||||| || || ||||| |||| |||| ||| | ||
Sbjct 1289 ACAATGTCGTCATCAGATTGGCTTGTAAGTTG-GGAGAAGT-AAAGGAAGCTGTTAGATT 1346
Query 1311 ATGGAACGAAATGGAAGCTAATGGTTTAAGTCCTGGAGTTGACATGTTTGTTATTATGAT 1370
||||||||||||||||| || ||||| ||||||||||| || | |||||| || |||||
Sbjct 1347 ATGGAACGAAATGGAAGAAAACGGTTTGAGTCCTGGAGTAGATACGTTTGTCATAATGAT 1406
Query 1371 CAACGGATTTA-CTAGCCAAGGTTATCTAATCGAAGCCTGCAATCACTTCAAAGAAATGG 1429
||| ||||| | | |||||||||| | || ||||||| | ||||||||||||||||||
Sbjct 1407 CAATGGATT-AGCAAGCCAAGGTTGTTTACTCGAAGCGAGTGATCACTTCAAAGAAATGG 1465
Query 1430 TAAGC-CGAGGATTATTCTCTGCGCCTCAATATGGAACGCTGAAGTCATTGCTAAATACT 1488
||| | |||||| | ||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1466 TAA-CTCGAGGACTGTTCTCTGTTTCTCAATATGGAACTCTGAAGTTATTGCTAAATAC- 1523
Query 1489 C-TTCTAAGAGATGATAAGCTTGAAATGGCGAAAGATGTATGGAGTTGCTTATCA-AACA 1546
| || ||| ||| | ||||||||||||||||||||||| |||||||| | |||| ||
Sbjct 1524 CGTTTTAAAAGACAAGAAGCTTGAAATGGCGAAAGATGTTTGGAGTTG-T-ATCACAAGT 1581
Query 1547 AAACCTCTTCTTGTGAGCTGAATGTATCAGCTTGGACAATATGGATCCATGCTTTGTTCG 1606
||| | |||| ||||||||||||| | |||||||||||||||| ||||| ||||||
Sbjct 1582 AAAGGTG--CTTGCGAGCTGAATGTATTATCTTGGACAATATGGATACATGCCTTGTTCT 1639
Query 1607 CAAAAGG-TCACGTGAAGGAAGCATGTTCGTATTGTCTTGATATGATGGAGATGGACTTG 1665
||||||| | | | |||||||| ||||| |||||| |||| ||||| |||||||||||
Sbjct 1640 CAAAAGGCT-ATGAAAAGGAAGCGTGTTCTTATTGTATTGAAATGATAGAGATGGACTTC 1698
Query 1666 ATGCCGCAACCTA-ATAC-TTACGCGAAACTTATGAAAGGATTGCATAAACTGTATAACA 1723
||||| ||||| | | || || || ||||||||||| || ||| | ||| ||||||| |
Sbjct 1699 ATGCCACAACC-AGACACATTT-GCTAAACTTATGAAGGGTTTGAAGAAATTGTATAATA 1756
Query 1724 G-GACGATCGCTGCAGAGATTACAGAGAAGGTGATGAAGATGGCGAG-TGAGAGAGAGAT 1781
| || | |||| |||||||||||||||||||| ||| ||||| || ||||||||||||
Sbjct 1757 GAGAATTT-GCTGGAGAGATTACAGAGAAGGTGAGGAATATGGC-AGCTGAGAGAGAGAT 1814
Query 1782 GAGTTTTAAAATGTATAAGAAGA-GAGGTGAGGAGGATTTGATTGAGAAAGCTAAACCTA 1840
||||||||| |||||||||| || |||| | | | ||||||| ||||||||||||| |||
Sbjct 1815 GAGTTTTAAGATGTATAAGA-GAAGAGGAGTGCAAGATTTGACTGAGAAAGCTAAATCTA 1873
Query 1841 AAGGTAATAATAAAGAAGGGAAGAAGAAA 1869
|| || | || ||||||||||||||||
Sbjct 1874 AAC--AAGA-TAGAGAAGGGAAGAAGAAA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177590978220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5