BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323570
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49920.1 | Symbols: VDAC5, ATVDAC5 | voltage dependent anion... 592 2e-168
> AT3G49920.1 | Symbols: VDAC5, ATVDAC5 | voltage dependent anion
channel 5 | chr3:18505836-18507699 REVERSE LENGTH=681
Length=681
Score = 592 bits (320), Expect = 2e-168
Identities = 371/396 (94%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 437 CTGGGTATGACACTACATCTCGAACTTTCACAAAGTACAACGTCGGAATCAGTGTCACAA 496
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 287 CTGGGTATGACACCACATCTCGAACTTTCACAAAGTACAACGTCGGAGTCAGTGTCACAA 346
Query 497 AGCCAGATCGATGTGCCTCCATAATATTGGGAGATAAAGGAGATTCGATCAAAGCTTCTT 556
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 347 AGCCAGATCAATGTGTCTCCATAATATTGGGAGATAAAGGAGATTCGATCAAAGCCTCTT 406
Query 557 ATCTTTATCACCTAGATGAGTCGAAGAGAAGCGCGGCAGTTGGAGAGGTTATCAGGAAAA 616
|| | ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 407 ATGTATATTACCTAGATGAGTCGACGAGAAGCGCAACAGTTGGAGAGGTTATCAGGAAAA 466
Query 617 TCTCAACGAACGAGAAC-ACAGTAACTGTTGGTGGATTGTATGCTGTTGATCACTTGACG 675
||||||| || ||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 467 TCTCAACTAATGAG-ACAACAGTAACTGTTGGTGGATTGTATGCGGTTGATCACTTAACG 525
Query 676 AATGTTAAAGCTAAGCTGAACAGTAACGGTAAGCTTGGAGCTCTTCTGCAACATGAGGTC 735
||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 526 AATGTGAAAGCTAAGCTGAACAGTAACGGTAAGTTTGGAGCTCTTCTGCAACACGAGGGC 585
Query 736 CTTCCAAAATCGATAGTGACAATCTCAGGTGAGATTGATACCAAGACATTAGACAAGTAC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CTTCCAAAATCGATAGTGACAATCTCAGGTGAGATTGATACCAAGACATTAGACAAGTAC 645
Query 796 CCAAGGTTTGGTCTCTCTCTTGCACTTAAACCTTGA 831
|||||||| |||||||| ||| | ||||||||||||
Sbjct 646 CCAAGGTTAGGTCTCTCGCTTTCCCTTAAACCTTGA 681
Score = 383 bits (207), Expect = 2e-105
Identities = 221/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAAGGGTCCGGGACTATTCGCCGATATCGGAAAATCTGCGAAAGATCTGTTGACG 60
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1 ATGAGTAAGGGTCCGGGACTATTCGCCGACATCGGAAAATATGCGAAAGATCTGTTGACG 60
Query 61 AGAGATTACAGTACCGATCAGAAATTCAGTATCTCCACTAACAGTGTCTCCGGCGTCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATTACAGTACCGATCAGAAATTCAGTATCTCCACTAACAGTGTCTCCGGCGTCGCT 120
Query 121 CTTACTTCCACTGCTCTCAAGAATGGAGTACTACATGCTGCTAATGTTGCTACACAATAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTACTTCCACTGCTCTCAAGAATGGAGTACTACATGCTGCTAATGTTGCCACACAATAC 180
Query 181 AAGTACAGAAATGCTTTGTTCGATGTCAAGATCGATACTGATTCCAAT 228
||||||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct 181 AAGTACAGAAACACTTTCTTCGATGTCAAGATCGATACTGATTTCAAT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5