BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323579

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50020.1 | Symbols:  | Serine protease inhibitor, potato inh...   411    2e-114


> AT3G50020.1 | Symbols:  | Serine protease inhibitor, potato inhibitor 
I-type family protein | chr3:18542165-18542687 REVERSE 
LENGTH=291
Length=291

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 270/293 (92%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  1    ATGAATCGTAGTTGTCCGATCTTTGGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT  60
            |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATT  60

Query  61   TCGTGCCAACCTCTATTTCCAGGAATGAAGGTGGAATGGCCAGAACTAACA-GGAGTAA-  118
             ||||||||||||||||||||||||| |||||||| ||||||||| ||| | ||||||| 
Sbjct  61   ACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAA-ATGGAGTAAA  119

Query  119  GTGGACTTGAAGCTAAGAGAAGAATCGAACATGACAATCCAAAAGTGGTGGCTGTTATCA  178
            | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  120  G-GGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCA  178

Query  179  TTCCCGATGATGTTGCTGTGGTAGCCATCAATTGTTGTAACCGTGTCATTCTCCGTGTTC  238
            |||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||||
Sbjct  179  TTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTC  238

Query  239  CCGTTAACAACTGTCCCAATGGTCCTGTCCTTAATATTCCTCACGTCGGATGA  291
            |||| ||||||||||||||||||||||||  |||| |||||||| ||||||||
Sbjct  239  CCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5