BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323580
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50030.1 | Symbols: | ARM-repeat/Tetratricopeptide repeat (... 2370 0.0
> AT3G50030.1 | Symbols: | ARM-repeat/Tetratricopeptide repeat
(TPR)-like protein | chr3:18546490-18548132 REVERSE LENGTH=1506
Length=1506
Score = 2370 bits (1283), Expect = 0.0
Identities = 1428/1499 (95%), Gaps = 6/1499 (0%)
Strand=Plus/Plus
Query 1 ATGCTCAAATTTGATGAACCACCGTGCACAAACCCATCTTGTTTCTTCTGCAGCATGAAA 60
||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGCTGAAATTCGATGAACCAAAATGCACAAACCCATCCTGTTTCTTCTGCAGCATGAAA 60
Query 61 GAGACCAACCCTTTTCGTCGAAGATCGAAACTCGCTGCAATCTTCAAAGAGATTCCTCGT 120
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GATACCAACCCGTTTCGTCGAAGATCAAAACTCGCTGCAATCTTCAAAGAGATTCCTCGT 120
Query 121 ACGGAGTCAAAAGACCATGTCTTGGTCTTGAGTGGTCTGTGGAACATAGCCATGTCCGAG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ACGGAGTCAAAAGACCATGTCTTGGTCTTGAGTGGTTTGTGGAACATAGCCATGTCCGAG 180
Query 181 CCTGACGATCCTGAGTTCCCATCACTAGGTTTGTTCGAGTGTATGTCAAAACTCATACAT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTGACGATCCTGAGTTCCCGTCACTAGGTTTGTTCGAGTGTATGTCAAAACTCATACAT 240
Query 241 AAATCTATCAAAAACAGTGCTTGGCTTCTCAAAGACCAGAACATATTCATTCCTTATTAC 300
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATCGATCAAAAACAGTGTTTGGCTTCTCAAAGACCAGAACATATTCATTCCTTATTAC 300
Query 301 GCAGCTCACATAATCGGATCTTATGTTATGAACAAGGAAGATTTAGCTACCATAGCGGTT 360
|||||||| || || ||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 301 GCAGCTCATATCATTGGATCGTATGTTATGAACAAGGAAGATTTAGCTGCCATGGCGGTT 360
Query 361 GATTCAAAGGTCTTTGTTGTTCCTGCTTTGTTGGAGCTTTTGAGAGGGAAGATCAGTTGG 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATTCAAAGGTCTTTCTTGTTCCTGCTTTGTTGGAGCTTTTGAGAGGGAAGATCAGTTGG 420
Query 421 GTTGAGCAGCGAGCCGCGGCTCGAGCACTTGGTCACTTAGCTAGCCATGAGAAGAGCTTT 480
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 GTTGAGCAGCGAGCCGCAGCTCGAGCACTTGGTCATTTAGCTAGCCATGAGAAGAGTTTT 480
Query 481 GAAGCTGTTTCTTTGTTCGAAGAAGAAATTGTGAAGCTTTCGATGGAGATAGCAACTAAT 540
||||| |||||||| |||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 481 GAAGCGGTTTCTTTATTCGAAGAAGAAATTGTGAAGCTTGCAATGGAGATAGCTACTAAT 540
Query 541 TGTTTGAAAAATGTTTACAAAAGCTTCCTTGGGGTTGAAGATAGCGAG-AGGTTAAAGTA 599
|||||||| ||||||||||||||||| ||||||||||||||||| | | |||||||||||
Sbjct 541 TGTTTGAAGAATGTTTACAAAAGCTTTCTTGGGGTTGAAGATAG-GGGTAGGTTAAAGTA 599
Query 600 TCAGAGCGATTTGTTGACTAGAGGGCTTGGT-GGTTTAGAGACAGAGAATCAAAAAGCAG 658
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 600 TCAGAGCGATTTGTTGACTAGAGGGCTTGGTGGGTTT-GAGACAGAGAATCAAAAAGCAG 658
Query 659 AGGAATGGGGGATTCAGCTACAATGTTGGTCTTTATTTCTATTGAATTGTTTCGCATCGC 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 AGGAATGGGGGATTCAGCTACAATGTTGGTCTTTATTTCTATTGAATTGTTTCGCATCTC 718
Query 719 GAGTAAACCGGAAGTCTCCGGGAGGAATTGGATTGATCAAA-ACTCTTTGTAAAACAGAG 777
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 719 GAGTAAACCGGAAGTCTCCGGGAGGACTTGGATTGAT-AAAGTCTCTTTGTAAAACAGAG 777
Query 778 TTGGGGAGAAAGAGAGTTAGTGAGGTTAGAGAAGTTATTGAGAGGCTTTGCGATCTTTCG 837
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 778 TTGGGGAGAAAGAGAGTTAGTGAGGTTAGAGAAGTGATTGAGAGACTTTGCGATCTTTCG 837
Query 838 AGATCATCTGATGATTGGAAAGAAACTGCTTTAGATACCCTTTTGTTGCTTCTTAAAGAC 897
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 AGATCGTCTGATGATTGGAAAGAAACTGCTTTAGATACACTTTTGTTGCTTCTTAAAGAC 897
Query 898 TCAAATGTTAGAGTAGCTCAGATAGTTTTGCAAGATTATCACAAGATTAAGTATAGTGGC 957
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 TCAAATGTTAGAGTAGCTCAGATAGTTTTACAAGATTATCACAAGATTAAGTATAGTGGC 957
Query 958 TTGAAGATGACTACCGAGGAAGCTCATAAAAGTATAGAGAATCTATGGgagattaaagta 1017
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 TTGAAGATGACGACCGAGGAAGCTCATAGAAGTATAGAGAATCTATGGGAGATTAAAGTA 1017
Query 1018 gagaggaagaagaaagagaagcttatgagtgaaacagagcttgaagaaagaagaaagatg 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAGAGGAAGAAGAAAGAGAAGCTTATGAGTGAAACAGAGCTTGAAGAAAGAAGAAAGATG 1077
Query 1078 gtgaaatctttgaagaagcaagggaagaagaagtttttgaagggttttGTTAAAGAAGCG 1137
||||| || || ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTGAAGTCGTTAAAGAAACAGGGGAAGAAGAAGTTTTTGAAGGGTTTTGTTAAAGAAGCG 1137
Query 1138 ATGGAGATTTACACTGTTGGGATTGATTTGTGTCCGTTGGATATGTTAAGAGATAGGGTT 1197
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGGAGATTTACACAGTTGGGATTGATTTGTGTCCGTTGGATATGTTAAGAGATAGGGTT 1197
Query 1198 GTGTTGTTTAGTAACAGAGCACAATGTTACTTGTTGTTGAAGAAAGCTGAGTCTGCTATT 1257
||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 1198 GTGTTGTTTAGCAACAGAGCACAGTGTTACTTGTTGTTGAAGAAAGTTGAATCTGCTATT 1257
Query 1258 AGTGATGCTACTAGGGCTTTGTGTTTATCTGGTGTGGGTGATCCACACGGTAAGAGTTTG 1317
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 1258 AGTGATGCTACTAGGGCTTTGTGTTTATCTGGTGTGAATAATCCCCACGGTAAGAGTTTG 1317
Query 1318 TGGAGAAGATCTCAAGCGTTCGATTTAAAAGGGTCGGCGAGAGAGAGCTTGATGGATTGT 1377
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1318 TGGAGAAGATCTCAAGCGTTCGATTTAAAAGGATCGACGAGAGAGAGCTTGATGGATTGT 1377
Query 1378 TTAGCGTTCGTTGATCAACGAGTCAAGCATTCGAATACGCAGAGGATTCCCTACTACGCG 1437
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1378 TTAGCGTTCGTTGATCATCGAGTCAAGCATTCAAATACACAGAGGATTCCCTACTATGCG 1437
Query 1438 GCGCAGATGATAAGAAAGCAGATGAGCGCCACGTGGGTTTTCTCTGGGGTTGTGTGGAA 1496
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1438 GCGCAGATGATAAGAAAACAGATGAGCGCCACGTGTATTTTCTCTGGGGTTGTGTCGAA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5