BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323582
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50050.1 | Symbols: | Eukaryotic aspartyl protease family p... 2850 0.0
> AT3G50050.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:18553984-18557209 REVERSE LENGTH=2147
Length=2147
Score = 2850 bits (1543), Expect = 0.0
Identities = 1790/1909 (94%), Gaps = 17/1909 (1%)
Strand=Plus/Plus
Query 1 ATGGCACTGCCGTCGATCTCATCAATCGGCGCTACATTCTCAATCCTAATCTATTTCTTC 60
|||||||||||||||||||||||||||||||| || |||||| |||||||||| | ||
Sbjct 95 ATGGCACTGCCGTCGATCTCATCAATCGGCGCGACGTTCTCACTCCTAATCTA--T-TTA 151
Query 61 TCTCTTCCTTATTCAATCACAGCTGGTGAAAACAA---CCTCCACCATTCTCCCTCCGCT 117
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 152 TCTCTTCCTTATTCAATCACAGCTGGTGAAAACAACCTCCTCCACCAATCTCCAACCGCT 211
Query 118 AGATCACGACGTCCCATGGTCTTCCTATTGTTTCACTCTCAACCAAATTCTTCTTCTTCT 177
|||||||||||||||||||| |||| |||||| | |||||||||||| |||||||||
Sbjct 212 AGATCACGACGTCCCATGGTGTTCCCATTGTTCCTCTCTCAACCAAA---TTCTTCTTCG 268
Query 178 AGATCCATCTCAATTCCC-CATCGAAAACTCCACAAATCCGACTCAAAATCACTGCCTCA 236
|||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 269 AGATCCATATCAA-TCCCACATCGAAAACTCCACAAATCCGACTCAAAATCACTTCCTCA 327
Query 237 CTCTCGCATGAGACTCTACGACGATCTTCTTATTAACGGGTATTACACAACGAGGCTTTG 296
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 328 CTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGGTATTACACTACGAGGCTTTG 387
Query 297 GATTGGTACACCGCCACAAATGTTTGCTCTTATAGTTGATTCTGGAAGTACTGTTACTTA 356
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTA 447
Query 357 TGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGGACCCAAAATTTCAGCCAGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGGACCCAAAATTTCAGCCAGA 507
Query 417 ATTGTCTAGTACTTATCAACCTGTGAAGTGTAACATGGACTGTAATTGTGATGATGATA- 475
| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 508 AATGTCTAGCACTTATCAACCTGTTAAGTGTAACATGGATTGTAATTGTGATGATGATAG 567
Query 476 AGGAACAATGTGTTTACGAGAGAGAGTATGCGGAACATAGTAGTAGTAAAGGTGTGCTTG 535
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 568 AG-AACAATGTGTTTACGAGAGAGAGTATGCTGAACATAGTAGTAGTAAAGGTGTTCTTG 626
Query 536 GAGAAGATCTTATATCATTTGGCAATGAAAGCCAGCTGACACCTCAACGAGCTGTTTTCG 595
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 GAGAAGATCTTATTTCATTTGGCAATGAAAGCCAGCTAACACCTCAACGAGCTGTTTTCG 686
Query 596 GTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAACGTGCTGATGGAATTATCGGAT 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 687 GTTGTGAAACTGTTGAAACCGGTGATCTTTATAGTCAACGTGCTGATGGGATTATTGGAT 746
Query 656 TAGGTCAAGGGGATCTTAGTCTTGTGGATCAATTGGTGGATAAAGGTTTGATAAGCAACT 715
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 747 TAGGTCAAGGAGATCTTAGTCTTGTTGATCAATTGGTGGATAAAGGTTTGATAAGCAACT 806
Query 716 CTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGAGGTTCGATGATTCTTGGCGGTT 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 807 CTTTTGGTTTGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTT 866
Query 776 TTGATTATCCATCTGATATGATATTCACAGACTCGGACCCTGATCGTAGTCCATATTACA 835
|||||||||||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct 867 TTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGTCCATATTACA 926
Query 836 ATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAATTGTCGCTTAATTCGAGAGTCT 895
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 927 ATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCT 986
Query 896 TTGATGGGGAACATGGCGCCGTTTTAGATAGTGGTACAACATATGCTTATCTCCCTGACG 955
|||| ||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 987 TTGACGGGGAACATGGCGCCGTACTAGACAGTGGTACAACATATGCTTATCTTCCAGACG 1046
Query 956 CAGCATTTGCAGCATTTGAGGAAGCTGTAATGAGAGAAGTTTCCCCATTGAAGCAGATTG 1015
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1047 CAGCATTTGCGGCATTTGAGGAAGCTGTAATGAGAGAAGTTTCCACATTGAAGCAGATTG 1106
Query 1016 ATGGTCCTGATCCAAATTTTAAAGATACTTGCTTCCTTGTCGCTGCAAGTAATGATGTCT 1075
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1107 ATGGTCCTGATCCAAATTTTAAAGATACTTGCTTCCAAGTCGCTGCAAGTAATTATGTCT 1166
Query 1076 CCGAACTTTCGAAGATATTCCCATCAGTCGAGATGATATTTAAGAGTGGGCAATCATGGC 1135
| |||||||| |||||||||||||| ||||||||| ||||||||||||| || |||||||
Sbjct 1167 CGGAACTTTCAAAGATATTCCCATCGGTCGAGATGGTATTTAAGAGTGGACAGTCATGGC 1226
Query 1136 TGTTGTCCCCTGAAAATTACATGTTTCGACATTCCAAGGTGCATGGCGCATACTGTCTCG 1195
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1227 TGTTGTCCCCTGAAAATTACATGTTTCGACATTCCAAGGTGCATGGTGCTTACTGTCTCG 1286
Query 1196 GTGTTTTTCCAAATGGAAAAGATCATACAACTCTTTTAGGAGGAATTGTGGTTCGCAATA 1255
|||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1287 GTGTCTTCCCAAACGGAAAAGATCACACAACTCTTTTAGGAGGAATTGTGGTTCGTAATA 1346
Query 1256 CACTTGTTGTGTATGATCGTGAGAATTCTAAGGTTGGATTCTGGAGAACTAACTGTTCAG 1315
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 1347 CACTTGTTGTGTATGATCGTGAGAATTCGAAGGTTGGATTCTGGAGAACCAATTGTTCGG 1406
Query 1316 AGTTATCGGATAGGCTTCATATTGATGGTGCACCACCACCTGCCACTTTGCCTTCAAATG 1375
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1407 AGTTATCGGATAGGCTTCATATTGATGGTGCACCACCACCTGCTACTTTGCCTTCAAATG 1466
Query 1376 ATTCAAATCCATCCCGCAATTCATCAAGTGATATC-CAAGGGGAGATTCAAATTGGTCAA 1434
|||||||||| |||| |||||||||||| || | || || | || |||| ||||||||
Sbjct 1467 ATTCAAATCCCTCCCACAATTCATCAAGCAATCTGTCA-GGTGTGACTCAAGTTGGTCAA 1525
Query 1435 ATAAACCTTGAT-TTGCAACTAACAGTCAATTCGTCCTATCTGAAACCTCGCATTGAAGA 1493
|||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1526 ATAAACCTTGATATT-CAACTAACAGTCAACTCGTCCTATCTGAAACCTCGGATTGAAGA 1584
Query 1494 GCTCTCCAAGATATTATCCAAGGAGCTTGATGTCAAATCTTCACAGGTCAGTTTATCGAA 1553
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1585 TCTCTCCAAGATATTCTCCAAGGAGCTCGATGTCAAATCTTCACAGGTCAGTTTATCGAA 1644
Query 1554 TCTCACCTCCAAAGGAAACGAGTCTCTCATCAGAATGGTTGTTGTTCCTCCTGAACCTTC 1613
|||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||
Sbjct 1645 TCTCACCTCCAAAGGAAACGAGTCTCTCGTCAGAATGGTTGTCCTCCCACCTGAACCTTC 1704
Query 1614 TACTTGGTTTTCAAATGTCACAGCAAGGAATATAGTATCCCGGTTTACCAATCATCAAAT 1673
|||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||
Sbjct 1705 TACTTGGTTTTCAAATGTCACAGCAACGAATATAGTTTCTCGGTTTACAAATCATCAAAT 1764
Query 1674 CAAGCTTCCTGAAATCTTCGGAAACTATCAGCTGGTTAATTACAAACTCGAGCCTCCAAG 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 AAAGCTTCCTGAAATCTTCGGAAACTATCAGCTGGTTAATTACAAACTCGAGCCTCCAAG 1824
Query 1734 AAAATGGACGAATAACAACATTACCGTGATCGCGATTGGGATCATCCCTGTAATTATCGG 1793
|||| ||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||
Sbjct 1825 AAAACGGACGAATAACAACATTGTCGTGATCGCGATTGGAATCATCGCTGTAATCGTCGG 1884
Query 1794 ATTATCAGCTTATGGAGCTTGGTTGATATGGAAACGGAAACAAACATCAATTCCATACAA 1853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 GTTATCAGCTTATGGAGCTTGGTTGATATGGAAACGGAAACAAACATCAATTCCATACAA 1944
Query 1854 ACCTGTTGATGAAGCTATAGTAGCTGAGCAAGAACTGCAACCTATATAA 1902
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1945 GCCTGTTGATGAAGCTATAGTAGCTGAGCAAGAACTTCAACCTATATAA 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5