BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323586
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | ... 1857 0.0
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | ... 320 2e-86
AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:185... 320 2e-86
> AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1
| chr3:18578353-18580594 FORWARD LENGTH=1288
Length=1288
Score = 1857 bits (1005), Expect = 0.0
Identities = 1160/1235 (94%), Gaps = 10/1235 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCTTAAACTAGCCACCGCCGAGAAACAAGTGCTTGAAGAGTTGGTGAAGCTACTT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 59 ATGGAGCTTAAACTAGCCACCGCCGAGAAACAAGTGCTTGACGAGTTGGTGAAGCTA-TT 117
Query 61 -CAGAGTCGAGATTTGCGTGGCGAAAATGGAAATTGGAAGGAATTTTTACATGTTCACGA 119
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 118 GCAGAGTCGAGATTTGCGTGGCGAAAATGGAAACTGGAAGGAATTTTTACATGTTTACGA 177
Query 120 CAAAAATGCCGAATCACCAAGTGACCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTT 179
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CAAAAATGCTGATTCACCAAGTGATCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTT 237
Query 180 TCTGACAACTTTTAAGAAGAAAGAAGATTTGCAAGTTCTGAAATGTCACGCCAATCATCT 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 TCTGACAACTTTTAAGAAGAAAGAAGATTTGCAACTTCTGAAATGTCACGCCAATCATCT 297
Query 240 TCTCCTTGAAAAGCTGAAGCAGGAATCCGAAGATGAAGACACTCCTGAGCGGAGGCTAGT 299
||| ||||||| ||||||| |||||| ||||||||||||||||||||| || ||||||
Sbjct 298 TCTGATTGAAAATTTGAAGCAAGAATCCCAAGATGAAGACACTCCTGAGCAGATGCTAGT 357
Query 300 TCGATTGACCA-TTGAGCATCCGAATTATTCAG-TAGACTATTCATTCAAGCCATACTCT 357
| |||||| || |||||||||||| ||| || | |||||||||| ||||||||||||||
Sbjct 358 TAGATTGA-CAGTTGAGCATCCGAGTTACTC-GTTAGACTATTCTTTCAAGCCATACTCA 415
Query 358 GAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGTCAAAGGTGATGCAATCAACTAAC 417
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 416 GAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAAC 475
Query 418 ATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGA 535
Query 478 GTTGGCGCTGTAGACCGTGATTTAAAGGTGATTCTTGATGAATTTGTGAAACCGGACAAA 537
||||| | |||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 536 GTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAA 595
Query 538 CATATTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCT 597
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCT 655
Query 598 ACACTCTCTGTGGCAGATATACAGGAAACGTTGCAGCCCTTTCTTTCTACGGGTACGATT 657
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 656 AGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATT 715
Query 658 TTGGTAGGTCACAGTTTGAACAGAGATTTGGAAGTGTTGAAGATAGATCATCCCAAAGTA 717
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 716 TTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTA 775
Query 718 ATCGACACTGCACTTGTATTCAGGTATTCC-AATACACGAAAGCTTAGAAGACCTTCACT 776
||||| || ||||||||||||| ||| ||| |||||||||||||| ||||||||||||||
Sbjct 776 ATCGATACCGCACTTGTATTCAAGTA-TCCGAATACACGAAAGCTCAGAAGACCTTCACT 834
Query 777 TAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGCGTTCCTCATGA 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 TAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGA 894
Query 837 TTGTGTACACGACGCAGAAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGT 896
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGT 954
Query 897 TGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCT 1014
Query 957 ACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTGGACCAAGTTCTCTCTGGAAAGTT 1016
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1015 ACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTT 1074
Query 1017 TACACTTGATGTGAAGCAAGCGAAAACACAGGGACGGTACTATTGTGCATTTGTTGTTTT 1076
||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||
Sbjct 1075 TACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTT 1134
Query 1077 TGGTAGTTCAGAAGACGCAGATCAAGCATTTGAAAACGTGGATGGAATTC-AAATGACGG 1135
||||||||||||||||||||||||||||||| || | |||||||| | |||||||||
Sbjct 1135 CCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAAT-CGAAATGACGG 1193
Query 1136 ATTCATTAGGCTTGCTACAAAAAGTGGTCATCGTTAAGCTGAGATCGGGATCAAGAGCTA 1195
||||||| || |||| |||||||||||||||| |||||||||| || |||||||||||||
Sbjct 1194 ATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTA 1253
Query 1196 GTATATATGTCCGTAAAATGGTTCAAGATGAATGA 1230
|||||||||||||||||||||||||||||||||||
Sbjct 1254 GTATATATGTCCGTAAAATGGTTCAAGATGAATGA 1288
> AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2
| chr5:1636298-1638939 FORWARD LENGTH=1702
Length=1702
Score = 320 bits (173), Expect = 2e-86
Identities = 547/721 (76%), Gaps = 52/721 (7%)
Strand=Plus/Plus
Query 428 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGT-TTAGTTAGAGTTGGC-GC 485
||||||||||||||||||||||||||||||||| ||| | | || |||||||||| | ||
Sbjct 555 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTT-GTTAGAGTTG-CTGC 612
Query 486 TGTAGACCGTGATTTAAAGGTGATTCTTGATGAATTTGTGAAACCGGA-CAAACATATTG 544
|| ||||||||||||||||||||||||||||| |||||||||||| | ||| | |||
Sbjct 613 AGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGG-TTG 671
Query 545 TTGACTATAGGACAGACATTACAGGGA-TTACTGCTGAAGATATCGAAAATGCTAC-ACT 602
||||||||||||| |||||| || | |||||||| ||||| | ||||| ||||| | |
Sbjct 672 TTGACTATAGGACTTTCATTACTGG-ACTTACTGCTCAAGATCTTGAAAAGGCTACTA-T 729
Query 603 CTCTGTGGCAGATATACAGGAAACGTTGCAGCCCTTTCTTTCT-ACGGGTACGATTTTGG 661
||||||| |||||||||||||| |||| | ||| | ||| | || ||| |||||||
Sbjct 730 ATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGA-GGATACAATTTTGG 788
Query 662 TAGGTCACAGTTTGAAC-AGAGATTTGGAAGTGTTGAAGATAGATCATCCCAAAGTAATC 720
| ||||| ||||||||| | ||| | |||| |||||| | |||||| ||| ||||||
Sbjct 789 TTGGTCAAAGTTTGAACCAT-GATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAATT 847
Query 721 GACACTGCACTTGTATTCAGGTATTCCAAT-AC---ACGA-AAG-C-TT-A-GA---A-- 766
|| ||| ||||||| || | |||| | || || || | ||| | || | || |
Sbjct 848 GATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTAAA 907
Query 767 -GACCTTCACTT-AACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCC-GAAAGACCG 823
||||||| || || | || ||||||| ||| ||||| || ||||| | |||||| |
Sbjct 908 AGACCTTCT-TTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAA-G 965
Query 824 GCGTTCCTCATGATTGTGTACACGACGCAGAAGCTGCGATGAAACTTGCACTTGCTGTTG 883
| ||||| || ||||||| || || ||||||||||| |||||||||| ||||||| |
Sbjct 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025
Query 884 TAGAGAAAAGAGTTGACACAACAAT-CAAACCATCTAAAGAGATGTTGGAGGTTGAGAAA 942
|||| || ||| || || | | | | | |||||||||||||||||| | ||||||
Sbjct 1026 TAGATAATGGAGCAGAGACCTCCGTTCCA-CTATCTAAAGAGATGTTGGAAGCTGAGAA- 1083
Query 943 G-CAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTGGACCAAGT 1001
| |||| |||| || |||| ||||||| |||||| |||| ||||||| | | |||
Sbjct 1084 GTCAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGT 1143
Query 1002 TC-TCTCT-GGAAAGTTTAC-ACTTGATGTGAAGCAAG-CGAAAACACAGGGACGGT-AC 1056
| | || || | | | | || ||| || |||| | |||||| ||| | || || ||
Sbjct 1144 -CGTTTCCAGGGA--TATCCCACATGAAGTTAAGCC-GTCGAAAAAACAAG-ACCGTCAC 1198
Query 1057 TA-T-T-GTGC-ATTTGTTGTTTTTGGTAGTTCAGAAGACGCAGATCAAGCATTTGAAAA 1112
|| | | | || ||| ||||||||| ||| ||||||| ||| ||||||||||||||||
Sbjct 1199 TACTATAGCGCGATT-GTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAA 1257
Query 1113 C 1113
|
Sbjct 1258 C 1258
> AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:18575432-18577336
FORWARD LENGTH=969
Length=969
Score = 320 bits (173), Expect = 2e-86
Identities = 328/401 (82%), Gaps = 18/401 (4%)
Strand=Plus/Plus
Query 277 GACACTCCTGAGCGGAGGCTAGTTCGATTGACCATTGAGCATCCG-AATTATTC-A-GTA 333
||| ||||||| | |||||||||||||||||||| |||| ||||| || || | | ||
Sbjct 82 GACTCTCCTGAACAGAGGCTAGTTCGATTGACCAATGAGAATCCGCAA-TA--CAATGTC 138
Query 334 GAC-TATTCATTCAAGCCATACTCTGAGGACTGGTTTGTATCCGATGTTGGAATGAAGAT 392
||| | || ||| | ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 139 GACTTTTTGTTTC-ATTCATACTCCAAGGACTGGTTTGTATCCGATGTTGGAATGAAAAT 197
Query 393 GTCAAAGGTGATGCAATC-AA-CTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGT 450
|||||| |||||| | || || | || ||| ||||| |||| ||||| |||||||| |||
Sbjct 198 GTCAAATGTGATG-ATTCCAAACCAA-ATGCTAGCTCTTGACTGTGAAATGGTTCTATGT 255
Query 451 GAAGATGGGACTGAGGGTTTAGTTAGAGTTGGCGCTGTAGACCGTGATTTAAAGGTGATT 510
||||||||||| |||||| | ||||||||||||||||| ||||| |||||||||||||
Sbjct 256 GAAGATGGGACAGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAAAGGTGATC 315
Query 511 CTTGATGAATTTGTGAAACCGGACAAACATATTGTTGACTATAGGACAGAC-ATTACAGG 569
||||| |||||||||||||| |||||| | | || ||||||||||||| | ||||| ||
Sbjct 316 CTTGACGAATTTGTGAAACCACACAAACCTGTGGTCGACTATAGGACAG-CTATTACTGG 374
Query 570 -GATTACTGCTGAAGATATCGAAAATGCTACACTCTCTGTGGCAGATATACAGGAAACGT 628
| |||||||||||||| || |||| || || |||||| ||| ||||| ||||||| |
Sbjct 375 AG-TTACTGCTGAAGATGTCCAAAAAGCCACTCTCTCTCTGGTGGATATTCAGGAAAAAT 433
Query 629 TGCAGCCC-TTTCTTTCTACGGGTACGATTTTGGTAGGTCA 668
|| || || ||||||||| | ||| | |||||| ||| |||
Sbjct 434 TG-AGGCCGTTTCTTTCTGCTGGTGCAATTTTGATAGATCA 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5