BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323593
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50180.1 | Symbols: | Plant protein of unknown function (DU... 2407 0.0
AT3G50170.1 | Symbols: | Plant protein of unknown function (DU... 468 9e-131
AT3G50140.1 | Symbols: | Plant protein of unknown function (DU... 449 3e-125
AT3G50120.1 | Symbols: | Plant protein of unknown function (DU... 353 3e-96
> AT3G50180.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:18604941-18607162 REVERSE LENGTH=1769
Length=1769
Score = 2407 bits (1303), Expect = 0.0
Identities = 1553/1673 (93%), Gaps = 20/1673 (1%)
Strand=Plus/Plus
Query 68 cacaaccaccaccaccaccaccactacc-ccgtctagaattacgacgacaaccaccacca 126
||| ||||||||||||||| |||| ||| | || ||| | ||||| || || || | |
Sbjct 98 CACCACCACCACCACCACCTCCACCACCACGGT-TAGGACCACGACTACGACTACGA-CT 155
Query 127 cc-accaccaccacGACAACAACTATTACGATTACGAAAGCAACATCCAC---TACTACC 182
|| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 156 CCTACCACCACCACGACAACAACTACTACGATTACGAAAGCAACAGCCACTAGTACTACC 215
Query 183 CCAATCATTGCCACTACGACCACGAGCGATTCCTTGGCTTACTGGGCATGATGTCAAAAA 242
|| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 216 TGAACCATTGCCATTACGACCACGGGCGATTCCTTGGCTTACTGGACATGATGTCAAAAA 275
Query 243 AGGAAAATCATACGACAAGTTGAGAGAATACGTCGAAAATGTCCGTAAG-CAAAACGAAG 301
||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 276 AGGAAAATCTTATGACAAGTTGAGAGAATACGTCGAAAATGTCCGT-AGACAAAACGAAG 334
Query 302 AATCCGAACTTGTCCTTTTAAACAAAAGTATCAGCTATCAAGACCAAAACTTGGAGAACC 361
||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 335 AATCCGAACGTGTCGTTTTACCCAAAAGTATCAGCTATGAAGACCAAAACTTGGAGAACC 394
Query 362 ACCAAGACACTCGTTCTGAACAATCTGGAATGAACGAGGTGGTCGAAGGGAGCAGGAGCG 421
| ||||||||||||||| | || ||||||| ||||||||||||| | || ||||||
Sbjct 395 AGCAAGACACTCGTTCT--A-AACCTGGAATAAACGAGGTGGTCG-A---AG--GGAGCG 445
Query 422 GGAGTAAACGACTTGAATGGGTGATCTCAATGGAAGGCAAGCTCAAGGAAGCATATAGAG 481
||| ||||||||||| |||||||||||||| ||| ||||||| || ||||||| |||
Sbjct 446 GGACCAAACGACTTGAGTGGGTGATCTCAATAAAAGACAAGCTCGAGCAAGCATACAGAA 505
Query 482 ACGATGACAGAACTAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 ACGATGACAGAACTAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATG 565
Query 542 GAAACGACAAGAAGTCGTATTTCCCTCAGACTGTCTCGCTTGGTCCATACCACCATGGGA 601
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 566 GAAACGACAAGAAGTCGTATTTCCCTCAGACTGTCTCACTTGGTCCATATCACCATGGGA 625
Query 602 GACAGCAAACACAGTGCATGGAGTGCCACAAATGGCGTGCCGTCAGTATGGTACTGAAAC 661
||||||||||||||| |||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 626 GACAGCAAACACAGTCCATGGAGTGCCATAAATGGCGTGCCGTCAATATGGTATTAAAAC 685
Query 662 GTACGAACCAAGGCATTGAAGTGTTTCTTGACGCCATGACAAAGCTTGAAGAGAAGGCTC 721
||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 686 GTACGAACCAAGGCATTGAAGTGTTTCTTGACGCCATGATAGAGCTGGAGGAGAAGGCTC 745
Query 722 GTGCTTGCTACGAAGGTCCCATTGTTTTG-GACAGTAACGGGTTCACAGAAATGCTTGTT 780
||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||| ||
Sbjct 746 GTGCTTGCTACGAAGGTTCCATTGTTTTGAG-CAGTAACGAGTTCACAGAAATGCTTCTT 804
Query 781 CTTGATGGCTGCTTTATTCTCGAGCTCCTCCAAGGAGTCGCTGAAGGATTCTTGAAACTC 840
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 805 CTTGATGGCTGTTTTATTCTCGAGCTCCTCCAAGGAGTCAATGAAGGATTCTTGAAACTC 864
Query 841 GGATATGATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 GGATATGATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATTCAACGT 924
Query 901 GACATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GACATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTA 984
Query 961 CAGCCCGATTCACAGAACAAAACTGGTTTAGTGGAATTAGTGGTTCGGTTCTTCGTTCCA 1020
|| |||| | |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 985 CAACCCGGTACACAGAACCAAACTGGTTTAGTGGAATTAGTGGTTCGGTTCTTTATTCCT 1044
Query 1021 CTAATGCCAACGGCCGAGACGTTGGCCGAGAACTCGCCGCCAAGAGGCGTATCCAATGGC 1080
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1045 CTAATGCCAACGGCCGAGACGTTGACCGAGAACTCGCCTCCAAGAGGCGTATCCAATGGA 1104
Query 1081 GAATTGCACTGTCTTGATGTTTTCCATCGAAGTCTGCTCTTCCCAAGATCAGCCGGAAAG 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1105 GAGTTGCACTGTCTTGATGTTTTCCATCGAAGTCTGCTCTTCCCAAGATCATCCGGAAAG 1164
Query 1141 GCAAATTGCTCACGCGTGGCTGACAAACATCTACAACGAGTGATACCAACCGTGACCGAA 1200
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1165 GCAAATTACTCACGCGTGGCTGACAAACACCTACAACGAGTGATACCTACCGTGACCGAA 1224
Query 1201 CTAAGGGATGCCGGTTTTAAGTTCAAGCTAAATAAAACCGACCGGTTTTGGGATATTAAA 1260
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1225 CTAAGAGATGCCGGTTTTAAGTTCAAGCTAAATAAAACCGATCGGTTTTGGGATATTAAA 1284
Query 1261 TTCAGCAACGGTTATCTAGAGATACCCAGTCTACTTATCCATGATGGTACCAAATCTCTC 1320
|||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1285 TTCAGCAATGGTTACCTGGAGATACCCGGTCTACTTATCCATGATGGTACCAAATCTCTA 1344
Query 1321 TTCTTGAATCTCATAGCTTTTGAGCAGTGTCATCTCGAGTCGAGCAATGATATAACATCC 1380
|||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1345 TTCTTGAATCTCATTGCTTTCGAGCAGTGTCATATCGAGTCGAGCAATGATATAACATCC 1404
Query 1381 TACATAATTTTTATGGACAATTTAATAGATTCTCCTGAAGATATTAGTTATTTGCATCAC 1440
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TACATAATATTTATGGACAATTTAATAGATTCTCCTGAAGATATTAGTTATTTGCATCAC 1464
Query 1441 CGTGGTATTATTGAGCACTCTCTAGGAAGTAATTCTGAAGTTGCGGATATGTTCAACCAG 1500
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TGTGGTATTATTGAGCACTCGCTAGGAAGTAATTCTGAAGTTGCGGATATGTTCAACCAG 1524
Query 1501 TTATGTCAGGAAGTGGTTTTCGACACCAAAGATATTTATCTATCCCAATTGTTGAGTGAG 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1525 TTATGTCAGGAAGTGGTTTTCGACACCAAAGATATTTATCTATCTCAATTGTTGATTGAG 1584
Query 1561 GTTCATCGTTGCTATGAACAAAACTACTCCAGGAAGTTGAATTCTTTGACAGCGACCTTG 1620
|||||||| || ||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1585 GTTCATCGCTGTTATAAACAAAACTACTCCAGGAAGTTGAATTCTTTGAAAACGACCTTG 1644
Query 1621 AAACACAAGTACTTAGATAACCCTTGGGCGTATTTGTCTTTCATTGCGGCAGTTATTCTT 1680
| || |||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1645 ATACTCAAGTACTTAGATAACCCTTGGGCATATTTGTCTTTCTTTGCTGCAGTTATTCTA 1704
Query 1681 CTAATTCTTACATTATCTCAAAGTTATTTTGCTGCTTATGCTTATTTTAATCC 1733
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1705 CTAATTCTTACATTCTCTCAAAGTTATTTTGCTGCTTATGCTTATTTTAATCC 1757
> AT3G50170.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:18601755-18603793 REVERSE LENGTH=1783
Length=1783
Score = 468 bits (253), Expect = 9e-131
Identities = 506/624 (81%), Gaps = 33/624 (5%)
Strand=Plus/Plus
Query 439 TGGGTGATCTCAATGGAAG-G-CAAGCTCAAGGAAGCATATAGAGACGATGACAGAACTA 496
|||||||||||||| ||| | ||||||| || ||||| |||||||||| |||| ||| |
Sbjct 323 TGGGTGATCTCAAT--AAGAGACAAGCTCGAGCAAGCAGATAGAGACGACGACACAACAA 380
Query 497 GCTGGGGCAAGCTCTGTATATACAAAGTTCCACATTACCTACATGGA-AACGACAAGAAG 555
||||| |||||||| || |||| |||||||||||||||||| || ||||||||||||
Sbjct 381 TTTGGGGAAAGCTCTGCATCTACAGAGTTCCACATTACCTACA-AGAGAACGACAAGAAG 439
Query 556 TCGTATTTCCCTCAGACTGTCTCGCTTGGTCCATACCACCATGGGAGACAGCAAAC-ACA 614
|| ||||||||||||||||| ||||||||||| ||||||||||| | | ||| | |
Sbjct 440 TCCTATTTCCCTCAGACTGTTTCGCTTGGTCCGTACCACCATGGTAAAAAGC-GTCTTC- 497
Query 615 GTG-C-ATGGAGTGCCACAAATGGCGTGCCG-TCAGTATGGTACTGAAACGTACGAACCA 671
| | | |||||| ||||||| ||||||| || ||| || ||| ||||||||| || |
Sbjct 498 G-GCCTATGGAGCGCCACAAGTGGCGTG-CGCTCAATAAGGTCCTGAAACGTTTAAAGC- 554
Query 672 AG-GCATTGAAGTGT-TTCTTGACGCCATGACAAAGCTTGAAGAGAAGGCTCGTGCTTGC 729
|| |||||||| ||| | | | | ||||||| | ||||||||||||||||||||||||||
Sbjct 555 AGCGCATTGAAATGTATAC-TAATGCCATGAGAGAGCTTGAAGAGAAGGCTCGTGCTTGC 613
Query 730 TACGAAGGTCCCATT-GTTTTGGA-CAGTAACGGGTTCACAGAAATGCTTGTTCTTGATG 787
|| |||||||||||| | ||| || ||| || | ||||||||||||||||||||||||||
Sbjct 614 TATGAAGGTCCCATTAG-TTT-GAGCAGGAATGAGTTCACAGAAATGCTTGTTCTTGATG 671
Query 788 GCTGCTTTATTCTCGAGCTCCTCCAAGG-AGTCGCTGAAGGATT--CTTGAAACTCGGAT 844
|||| ||| ||||||||||| || | || | || ||||||||| | || | | ||||
Sbjct 672 GCTGTTTTGTTCTCGAGCTCTTC-AGGGGAACCGTTGAAGGATTTACC-GAGA-TAGGAT 728
Query 845 ATG-ATCATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGTGAC 903
||| | | |||||| || ||||||||| | ||||||| ||||||||| || ||||||||
Sbjct 729 ATGCA-CGTAACGACCCGGTTTTCGCGATGCGAGGATTGATGCATTCAATTCAACGTGAT 787
Query 904 ATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAACCGGTTATTAGAGTTACAG 963
|||||||||||||||||||||||||| |||| || || ||||||||||||||||||||
Sbjct 788 ATGATAATGCTGGAAAATCAACTTCCCCTGTTTGTTCTTGACCGGTTATTAGAGTTACAG 847
Query 964 CCCGATTCACAGAACAAAACTGGTTTAGTGG-A-AT-TAGTGGTTCGGTTCTTCGTTCCA 1020
| || | |||| ||| |||| ||| |||||| | | ||| ||| |||||| | ||
Sbjct 848 CTCGGTACACAAAACCAAACCGGTATAGTGGCACACGTAGCCGTTAAGTTCTTTGACCCG 907
Query 1021 CTAATGCCAACGGCCGAGACGTTG 1044
||||||||||||| ||| |||||
Sbjct 908 CTAATGCCAACGGGAGAGGCGTTG 931
> AT3G50140.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:18592401-18594564 REVERSE LENGTH=1693
Length=1693
Score = 449 bits (243), Expect = 3e-125
Identities = 496/614 (81%), Gaps = 33/614 (5%)
Strand=Plus/Plus
Query 436 GAATGGGTGATCTCAATGGAAGGCAAGCTCAAGGAAGCATAT-AGAGACGATGACAGAAC 494
||||||||||| | || ||| |||| | || ||| | || ||||||| | || |||
Sbjct 267 GAATGGGTGATTTGGATCAAAGACAAGATGGAGCAAGTA-ATGAGAGACGCCGCCACAAC 325
Query 495 TAGCTGGGGCAAGCTCTGTATATACAAAGTTCCACAT-TACC-TACATGGAAA-CGACAA 551
|||||||| |||| ||||||| |||| |||||||| | | || || | ||| ||||||
Sbjct 326 TAGCTGGGACAAGATCTGTATCTACAGAGTTCCAC-TCTCCCTTA-A-AAAAAGCGACAA 382
Query 552 GAAGTCGTATTTCCCTC-AGACTGTCTCGCTTGGTCCATACCACCATGGGAGACAGCAA- 609
||| || || ||||||| || | |||||||||||||| |||||||||||| ||| | ||
Sbjct 383 GAATTCTTACTTCCCTCAAG-CAGTCTCGCTTGGTCCGTACCACCATGGG-GAC-G-AAC 438
Query 610 A-CACAG-TGCATGGAGTGCCACAAATGGCGTGCCGTCAGTATGGTAC-TGAAACGTACG 666
| | | | |||||| | |||||||||||||| |||| |||||| | ||||||||||
Sbjct 439 ATCTCCGACCCATGGACTATCACAAATGGCGTGCGGTCAATATGGT-CATGAAACGTACC 497
Query 667 AACCAAGGCATTGAAGTGTTTCTTGACGCCATGACAA-AGCTTGAAGAGAAGGCTCGTGC 725
|| |||||||| ||| ||| | |||||||||||| || |||| ||||||| |||||||||
Sbjct 498 AAGCAAGGCATCGAAATGTATATTGACGCCATGA-AAGAGCTCGAAGAGAGGGCTCGTGC 556
Query 726 TTGCTACGAAGGTCCCATTGTTTTGGA-CAGTAACGGGTTCACAGAAATGCTTGTTCTTG 784
||||||||||||||| |||| ||| || ||||||| |||||| ||||||| |||||||
Sbjct 557 TTGCTACGAAGGTCCTATTGGTTT-GAGCAGTAACAAGTTCACCCAAATGCTAGTTCTTG 615
Query 785 ATGGCTGCTTTATTCTCGAGCTCCTCCA-AGGAGTCGCTGAAGGATTCTTGAAACTCGGA 843
||||||| ||| ||||||| || || || ||||| | ||||||||||| |||||| ||
Sbjct 616 ATGGCTGTTTTGTTCTCGATCT-CTTCAGAGGAGCCTATGAAGGATTCTCGAAACTTGGG 674
Query 844 TATGATC-ATAACGATCCAGTTTTCGCGGTTCGAGGATCGATGCATTCGATACAACGTGA 902
|| || | | |||||||| ||||||||| | |||||||| ||||||||||| | ||||||
Sbjct 675 TACGACCGA-AACGATCCCGTTTTCGCGATGCGAGGATCTATGCATTCGATTCGACGTGA 733
Query 903 CATGATAATGCTGGAAAATCAACTTCCTTTGTTCGTACTCAA-CCGGTTATTAGAGTTAC 961
|||| |||||||||||||||||||||||||||| || || || ||||||||||||| |||
Sbjct 734 CATGCTAATGCTGGAAAATCAACTTCCTTTGTTTGT-CTTAAACCGGTTATTAGAGCTAC 792
Query 962 AGCCCGATTCACAGA-ACAAAACTGGTTTAGTGG-A-A-TTAGTGGTTCGGTTCTTCGTT 1017
| | || | |||| | || |||| |||||||||| | | |||| ||||||||||||| |
Sbjct 793 AACTCGGTACACA-ATACCAAACCGGTTTAGTGGCACAATTAGCGGTTCGGTTCTTCAAT 851
Query 1018 CCACTAATGCCAAC 1031
|| | ||||||||
Sbjct 852 CCGTTGATGCCAAC 865
> AT3G50120.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:18585000-18587312 REVERSE LENGTH=1819
Length=1819
Score = 353 bits (191), Expect = 3e-96
Identities = 415/519 (80%), Gaps = 32/519 (6%)
Strand=Plus/Plus
Query 1234 AAAACCGACCGGTTTTGGGATATTAAATTCAGCAACGGTTATCTAGAGATACCCAGTCTA 1293
||||||||||||||||||||||| |||||| |||||||||||||| ||||| || |||
Sbjct 1165 AAAACCGACCGGTTTTGGGATATGCAATTCAAAAACGGTTATCTAGAAATACCGAGGCTA 1224
Query 1294 CTTATCCATGATGGTACCAAATCTC-TCTTCTTGAATCTCATAGCTTTTGAGCAGTGTCA 1352
||||||||||| ||||||||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 1225 CTTATCCATGACGGTACCAAATCTCTTTTTC-TGAATCTTATAGCTTTTGAGCAGTGTCA 1283
Query 1353 TCTCGAGTCGAGCAATGATATAACATCCTACATAATTTTTATGGACAATTTAATAGATTC 1412
| |||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1284 TATCGATTCGAGCAATGATATAACATCCTACATAATCTTCATGGACAATCTAATAGATTC 1343
Query 1413 TC-CTGAAGATATTAGTTATTTGCA-TCACCGTGGTATTATTGAGCACTCTCTAGGAAGT 1470
|| | |||||| |||| || || || | || ||||||| || || || | ||||| ||
Sbjct 1344 TCAC-GAAGATGTTAGCTACTTACACT-ACTGTGGTATCATCGAACATTGGCTAGGGAGC 1401
Query 1471 AATTCTGAAGTTGCGGATATGTTCAACCAGTT-ATGTCAGGAAGTGGTTTTCGACACCAA 1529
|||||||||| |||||| ||||||||| ||| |||||| ||||| || ||||||||| |
Sbjct 1402 GATTCTGAAGTCGCGGATTTGTTCAACC-GTTTATGTCAAGAAGTTGTATTCGACACCGA 1460
Query 1530 AGATATTTATCTATCCCAA-TTGTTGAGTGAGGTTCATCGTTGCTATGAACAAAACTACT 1588
||||| ||| |||| | || | || ||||||| |||||| ||| || || || |
Sbjct 1461 AGATAGCTATTTATCT-AGGTTATCGATTGAGGTTAATCGTTACTACGATCATAAGT--- 1516
Query 1589 CCAGGAAGTTGAATTCTTTGACAGCGACCTTGAAACACAAGTACTT-AGATAACCCTTGG 1647
|||| | | ||| || || || |||||||| |||||||| | |||| || |||
Sbjct 1517 ---GGAA-T-G----CTTGGAGGGCTACGTTGAAACATAAGTACTTCA-ATAATCCATGG 1566
Query 1648 GCGTATT-TGTCTTTCAT-TGCGGCAGTTATTCTTCTAATTCTTACATTATCTCAAAGTT 1705
|| ||| | |||||| | ||| || |||||||| ||| | || || || ||||||||||
Sbjct 1567 GCA-ATTGTTTCTTTC-TGTGCTGCGGTTATTCTACTAGTCCTCACTTTCTCTCAAAGTT 1624
Query 1706 ATTTT-GCTGCTTATGCTTATTTTAATCCATCCT-CTTA 1742
||| |||| ||| ||||||| ||| ||| ||| ||||
Sbjct 1625 -TTTACGCTGTTTACGCTTATTATAAGCCA-CCTTCTTA 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5