BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323632
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50720.1 | Symbols: | Protein kinase superfamily protein | ... 1480 0.0
> AT3G50720.1 | Symbols: | Protein kinase superfamily protein
| chr3:18847519-18849430 REVERSE LENGTH=1134
Length=1134
Score = 1480 bits (801), Expect = 0.0
Identities = 1028/1138 (90%), Gaps = 14/1138 (1%)
Strand=Plus/Plus
Query 1 ATGGCCATTGCCCCGACGATGATGCTTTATCCGAACTACCCTTTTTTCATGTCAGCGTTT 60
||||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGGCCATTTCTCCGACGATGATGCTTAATGCGAACTACCCTTTTTTCATGTCAGCGTTT 60
Query 61 GGCTCAGATGAC---AATGAT---TCTGGTGACCATTTCGATTTCAATATCAGCAAAGAG 114
|||||||||||| |||||| |||| | |||| ||||||||||||||||||| ||||
Sbjct 61 GGCTCAGATGACAATAATGATGAGTCTGATAACCAGTTCGATTTCAATATCAGCAGAGAG 120
Query 115 TTGCTTCTCAACCCTAAAAACATCATGCTGGGAGAGATGATTGGAGAAGGAGGCAACTCC 174
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TTGCTTCTCAACCCTAAAGACATCATGAGGGGAGAGATGATTGGAGAAGGAGGCAACTCC 180
Query 175 ATCGTCTACAAAGGCCTATTCAAAGGCACTATGCCTGTGGCGGTGAAGATAGTGCAGCCG 234
||||| |||||||||| | ||||| || | | |||||||||||||||||||||||||||
Sbjct 181 ATCGTTTACAAAGGCCGACTCAAAAACATTGTTCCTGTGGCGGTGAAGATAGTGCAGCCG 240
Query 235 AGTAAAACATCTGCTGTAAGCATTCAACACAAACAACAGTTTCAAAAGGAGGTTCTGCTA 294
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 241 GGTAAAACATCTGCTGTAAGCATTCAGGACAAACAACAGTTTCAAAAGGAGGTTCTGGTA 300
Query 295 CTATCCTCGATGAAACATCTCAACATTGTGAGGTTTCTTGGAGCTTGCATAGAGCCACAA 354
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 301 CTATCCTCGATGAAACATGAAAACATTGTCAGGTTTGTTGGAGCTTGCATAGAGCCACAA 360
Query 355 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGATGATAGTTACCGAACTCGTAAGAGGTGGTACTCTTCAGAGGTTCATGTTGAACTCT 420
Query 415 CGTCCGAGTCCTCTAGATCTAAAGACGTCACTAACCTTTGCTTTGGACATTTCTCGAGCC 474
|| ||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 421 CGCCCGAGTCCTCTTGATCTCAAGGTGTCACTAAGCTTTGCTTTGGACATTTCTCGAGCC 480
Query 475 ATGGAGTTTTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 534
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGGAGTATTTGCACTCAAAAGGCATCATTCACCGTGACCTAAATCCAAGGAATGTTTTG 540
Query 535 GTAACTGGTGATATGCATCATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 594
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAACTGGTGATATGAAACATGTGAAGTTGGCTGATTTTGGACTTGCAAGAGAAAAGACT 600
Query 595 GTAGGTGGCATGACTTGTGAGGCGGGAACATATCGATGGATGGCTCCTGAGGTATGCAGC 654
| ||||||||||||||||||||||| || || || ||||||||||| ||||||||||||
Sbjct 601 CTTGGTGGCATGACTTGTGAGGCGGGCACGTACCGTTGGATGGCTCCAGAGGTATGCAGC 660
Query 655 CGTGAGCCACTCCTAATTGGGGAGAAAAAACACTACGACCACAAGATAGACGTTTATAGC 714
||||||||||||| ||||||||||||||||||||||||||| || || || || ||||||
Sbjct 661 CGTGAGCCACTCCGAATTGGGGAGAAAAAACACTACGACCAGAAAATCGATGTGTATAGC 720
Query 715 TTCGCATTGATTTTCTGGTCGTTGCTCACTAACCAGACACCATTCTA-TGGGATGGATGG 773
|||||| ||||||||||||| |||||||| ||| | ||||| ||| | || ||| | |
Sbjct 721 TTCGCACTGATTTTCTGGTCCTTGCTCACAAACAAAACACCTTTC-AGTGAGATACCTAG 779
Query 774 TATTTCTATTCCCTATTTTGTGAACCAGGGCATGAGACCAAGCCTAATT-AATATTCCTG 832
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 780 CATTTCTATTCCCTATTTTGTGAACCAGGGCAAGAGACCAAGCCTA-TCGAATATTCCTG 838
Query 833 ATGAGGTCGTACCAATTTTGGAATCGT-GCTGGGCCGAAGACTCAAAGAATCGTCTTGAA 891
|||||||||| || || || |||| || | ||||| | |||||||||| |||||| |||
Sbjct 839 ATGAGGTCGTCCCCATATTAGAAT-GTTGTTGGGCAGCGGACTCAAAGACTCGTCTCGAA 897
Query 892 TTCAAAGAGATTACTATCTT-CTTGGAAAGCTTGCTAAAAAGACTCTGCCCAGAGAGTAG 950
|||||||| ||||| |||| || ||||||||||||||||||| ||||| ||||||| ||
Sbjct 898 TTCAAAGATATTACAATCTCACT-GGAAAGCTTGCTAAAAAGATTCTGCTCAGAGAGAAG 956
Query 951 TAATGATGATATAACGGTAACAGACGATGAGGCTTATGATGATGAGATAGAGGAATTGGA 1010
|||| |||| |||||| | || || ||||| |||||||||||||||||||||||||||||
Sbjct 957 TAATAATGAGATAACGATCACCGAAGATGAAGCTTATGATGATGAGATAGAGGAATTGGA 1016
Query 1011 GACCACTTGGCTGCTTGGAAAGCGCTATATCAAGCTGAACAAACCTAAGAAGAAGAAGGA 1070
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 1017 GACCACTTGGCTGCTTCCAAAGCGCTATATCAAGCTGAAGAAACCTAAGAAGATCAAGCA 1076
Query 1071 GAAAGTGATGAAGAGGATACTTCCTTTCTTCAAGAAGTTCTTTTCTTCAAAGTGGTGA 1128
||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 GAACGTGATGAAGAAGATACTTCCTTTCTTCAAGAAGTTCATTTCTTCAAAGTGGTGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5