BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323639
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50780.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2529 0.0
AT2G24692.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 508 5e-143
> AT3G50780.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1);
Has 298 Blast hits to 298 proteins in 22 species: Archae
- 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18875399-18877534
REVERSE LENGTH=2019
Length=2019
Score = 2529 bits (1369), Expect = 0.0
Identities = 1497/1559 (96%), Gaps = 7/1559 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAGATCAAGATTGCAAAAGTAGAACAAAGGCAAACGAAGATTAGGAATGTTCCA 60
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 194 ATGGCGGAGATCAAGAATGCTAAAGTAGAACAAAGGCAAACGAAGATTAGGAATGTTCCA 253
Query 61 GTAGCTGTAACTCCTGAAGGTTTCTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GTAGCTGTAACTCCTGAAGGTTTCTGGTGTTGTCCTTCTCCTGTTGCGTTTCAAAAGACT 313
Query 121 CTTAAATCTCACAACTCTCTCACCAAACACAAACAATCTTCTCCT-C-C-TCAACCTCCT 177
|||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||
Sbjct 314 CTTAAATCTCACAACTCTCTCACCAAACACAAGCAATCTTCTCCTGCTCTTCAACCTCCT 373
Query 178 AAACCAGAGAAGAAACCATCTTCGACTACTATTAGATCCGTCATTGCCTCCGATGAAACT 237
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 374 AAGCCGGAGAAGAAACCATCTTCGACTACTATTAGATCCGTCATTGCTTCTGATGAAACT 433
Query 238 CAACAGAATTTGGGTGA-TTCTGACACCGTTCATAGTATTGCTGTTCCAGCGACGGTTCA 296
||||||||||||||| | || ||| || |||||||||||||||||||| |||||||||||
Sbjct 434 CAACAGAATTTGGGT-AGTTTTGATACTGTTCATAGTATTGCTGTTCCTGCGACGGTTCA 492
Query 297 AGAGAGACCACAGAGGCAAAAGGTTGAGACTTTACCGAGGAAAGTGGCGATTGAGTTTGG 356
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 493 AGAGAGACCACAGAGGCAAAAGGTTGAGACTTTACCGAGGAAAGTTGCTATTGAGTTTGG 552
Query 357 TGAACCAGGAAGTAGTGATGCTAAAGTGATTTTGGTTGGGAAGCAAGGTTTTTGTGTGAA 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TGAACCGGGAAGTAGTGATGCTAAAGTGATTTTGGTTGGGAAGCAAGGTTTTTGTGTGAA 612
Query 417 GCTGAGTGTTCATAAGAAAGTTTTAGTTGATCATAGTTGTTTCTTTGCTAAGAAACTAGC 476
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 613 GCTTAGTGTTCATAAGAAAGTTTTGGTTGATCATAGTTGTTTCTTTGCTAAGAAACTAGC 672
Query 477 TGAGAAAGATTCTGTTTTTGCTTGTCTTGAGATTGAGAGTTGTGAAGATGCTGAGATCTA 536
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 673 TGAGAAAGATTCGGTTTTTGCTTGTCTTGAGATTGAGAGCTGTGAAGATGCTGAGCTTTA 732
Query 537 CGTTGAGACCATTGGACTTATGTATTGTAAAGATATGAAGCAACGGCTTATGAAACAGAA 596
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 733 CGTTGAGACTATTGGACTTATGTATTGTAAAGATATGAAGCAACGACTTATGAAACAAAA 792
Query 597 TGTTAGCAGAGTTCTTCGTGTCCTCAAGGTTGCAGAGCTTCTTGGTTTTAGTTCATGTAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGTTAGCAGAGTTCTTCGTGTCCTCAAGGTTGCAGAGCTTCTTGGTTTTAGTTCATGTAT 852
Query 657 ACAGTCTTGTTTGGATTACTTAGAAGCTGTGCCTTGGGTTGGGGAAGAAGAAGAGGAGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACAGTCTTGTTTGGATTACTTAGAAGCTGTGCCTTGGGTTGGGGAAGAAGAAGAGGAGAA 912
Query 717 AGTTATCTCATCGATTCTTAGATTAAAAACCGAAGGAGTTGGTGTCACGCCTGTTCTCAA 776
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 913 AGTTATCTCATCGATTCTTAGATTAAAAACTGAAGGAGTTGGTGTCACGCCTGTTCTCAA 972
Query 777 ACGAGTTGCTTCTAGTGCTGTCGATCCACCAAAGGAGACGCTATCACGCATTATCGAACT 836
|||||||||||||| |||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 973 ACGAGTTGCTTCTAATGCTGTGGATCCACCAAAGGAGACGCTATCACGCATCATTGAGCT 1032
Query 837 TGTTTTAAGAAGCAAAGAGGAGAAAAGTCGACGTGAGATGAAATCTATTGTCCTGAAGCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1033 TGTTTTAAGAAGCAAAGAGGAGAAAAGTCGACGTGAGATGAAATCTATTGTTCTGAAGCT 1092
Query 897 TCTTAGGGAACAGAATGGGGCCAATGTAGCTGATAACTTCAACGAAACAATCTATTCCTC 956
|||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1093 TCTTAGAGAACAGAATGGAGCCAATGTAGCTGATAACTTCAATGATACAATCTATTCCTC 1152
Query 957 TTGCCAGAAC-TGCTTAGATTCGGTTCTGTCTCTGTTTAAACAAGCTTCTGAGGGAGAGA 1015
|||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TTGCCA-AACCTGCTTGGATTCGGTTCTGTCTCTGTTTAAACAAGCTTCTGAGGGAGAGA 1211
Query 1016 AACCTGAGACTGATACCAAACAGATTGCTGTAGAAGCGGATAACCTCACGTGGTTGCTTG 1075
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 1212 AACCTGAGACTGATACCAAACAGATTGCTGTAGAAGCAGATAACCTCACGTGGCTCCTTG 1271
Query 1076 ATGTATTAGCGGAAAGACAAGCTGCAGAGGAATTCTCAATCACATGGGCAAACCAAAAGG 1135
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1272 ATGTGTTAGCGGAAAGACAAGCTGCAGAGGAATTCTCAGTCACATGGGCAAACCAAAAGG 1331
Query 1136 AGCTTGCTTTGTTACACGAGAAGCTTTCTTTAATGTCTCGTTACCATATAAGCCGTGTAA 1195
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1332 AGCTCGCTTTGTTACATGAGAAGCTTCCTTTAATGTCTCGTTACCATATAAGCCGTGTAA 1391
Query 1196 CATCTCGACTCTTTATAGGGATTGGGAGAGGAGAATTGTTGCCTTCAAAGGACACTCGAC 1255
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 CATCTCGGCTCTTTATAGGGATTGGGAGAGGAGAATTGTTGCCTTCAAAGGACACTCGAC 1451
Query 1256 TTCTGCTACTAACTACATGGTTGCAACCGTTGTTCAATGACTATAACTGGCTCCAACATG 1315
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1452 TTCTGCTACTAACAACATGGTTGCAACCGTTGTTCAATGACTATAACTGGCTTCAACATG 1511
Query 1316 GTTGCAGATCGTTTGATGGTAAACTAGTGGAGGAAGGTATTGGTCGGACGATACTGACAT 1375
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1512 GTTGCAGATCGTTTGATGGTAAACTAGTGGAGGAAGGAATTGGTCGGACGATACTGACAC 1571
Query 1376 TGCCATTGGAAGATCAGCAGAGCATTTTGCTGTCGTGGCTCGGGAGTTTTCTAAACGGGG 1435
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1572 TACCATTGGAAGATCAGCAGAGCATTTTACTGTCGTGGCTCGGGAGTTTTCTAAACGGAG 1631
Query 1436 GAGATGGATGTCCGAATCTTCAGAGAGCTTTCGAGGTTTGGTGGAGACGGTCTTTCATTA 1495
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1632 GAGATGGATGTCCGAATCTTCAGAGAGCTTTTGAGGTTTGGTGGAGACGATCTTTCATTA 1691
Query 1496 GACCTTACTCAGATCTTCAAGCTAATGGTTCGTGTCAAACAGATTCGACTTCAAAAGAG 1554
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1692 GACCTTACTCAGATCGTCAAGCTAATGGTTCGTGTCAAACAGATTCAACTTCAAAAGAG 1750
> AT2G24692.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50780.1);
Has 46 Blast hits to 46 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10503604-10503974
FORWARD LENGTH=371
Length=371
Score = 508 bits (275), Expect = 5e-143
Identities = 304/318 (96%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 749 AAGGAGTTGGTGTCACGCCTGTTCTCAAACGAGTTGCTTCTAGTGCTGTCGATCCACCAA 808
||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||
Sbjct 37 AAGGAGTTGGTGTCACGCCTGTTCTTAAACGAGTTGCGTCTAATGCTGTGGATCCACCAA 96
Query 809 AGGAGACGCTATCACGCATTATCGAACTTGTTTTAAGAAGCAAAGAGGAGAAAAGTCGAC 868
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 97 AGGAGACGCTATCACGCATCATTGAGCTTGTTTTAAGAAGCAAAGAGGAGAAAAGTCGAC 156
Query 869 GTGAGATGAAATCTATTGTCCTGAAGCTTCTTAGGGAACAGAATGGGGCCAATGTAGCTG 928
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 157 GTGAGATGAAATCTATTGTCCTGAAGCTTCTTAGGGAACAGAATGGAGCCAATGTAGCTG 216
Query 929 ATAACTTCAACGAAACAATCTATTCCTCTTGCCAGAA-CTGCTTAGATTCGGTTCTGTCT 987
|||||||||| || |||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 217 ATAACTTCAATGATACAATCTATTCCTCTTGCCA-AACCTGCTTGGATTCGGTTCTGTCT 275
Query 988 CTGTTTAAACAAGCTTCTGAGGGAGAGAAACCTGAGACTGATACCAAACAGATTGCTGTA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CTGTTTAAACAAGCTTCTGAGGGAGAGAAACCTGAGACTGATACCAAACAGATTGCTGTA 335
Query 1048 GAAGCGGATAACCTCACG 1065
||||| ||||||||||||
Sbjct 336 GAAGCAGATAACCTCACG 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5