BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323654

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44070.1 | Symbols:  | Glycosyl hydrolase family 35 protein ...   183    2e-45
  AT3G43580.1 | Symbols:  | Beta-galactosidase related protein | ...  80.5    2e-14


> AT3G44070.1 | Symbols:  | Glycosyl hydrolase family 35 protein 
| chr3:15828177-15829088 REVERSE LENGTH=831
Length=831

 Score =  183 bits (99),  Expect = 2e-45
 Identities = 216/270 (80%), Gaps = 17/270 (6%)
 Strand=Plus/Plus

Query  474  CAACCTCAAACATCATAGCACCTTCATCCTTGCTCGAAACCTTGTCAAAGCACTACCTCG  533
            ||||||||  ||||  || ||| || |  ||||||||  |||||||||||||||||||||
Sbjct  453  CAACCTCACGCATCGGAGTACCGTC-T--TTGCTCGAGCCCTTGTCAAAGCACTACCTCG  509

Query  534  TGTAGTTC-TTCTCGTGCCGGCGAGAACCTCGACTTTGGCCCATT-CACCAACGCTACTT  591
            |||||||  || | |||||| ||||   | || ||||| ||| || ||||||||| ||||
Sbjct  510  TGTAGTTTGTT-TGGTGCCGCCGAGTTTCACGTCTTTGACCC-TTACACCAACGCCACTT  567

Query  592  CGTCTCTTGACAGTGGCTACTTTGTCCT-CCGTTGACTCGCTCTTGGAAGACTCGTCGAT  650
            |||||||||||| || | | || || || || |||| | |||||||||||| | ||||||
Sbjct  568  CGTCTCTTGACAATGACGAATT-GTTCTTCCTTTGATTTGCTCTTGGAAGATTTGTCGAT  626

Query  651  TAT-TTTTGATCTCACATGTACCAA-AAAGCTT-CAAAGCTTTTGGCTCAAAGCTCTCAA  707
            | | |||||||||||| || ||||| |||  || |  ||||||||| ||||||| |||||
Sbjct  627  T-TCTTTTGATCTCACTTGCACCAACAAA--TTACCTAGCTTTTGGTTCAAAGCCCTCAA  683

Query  708  GAAGTT-ATTATCGATTAACCTTATCTATC  736
            | | || || ||||||||||| ||||||||
Sbjct  684  GGATTTGAT-ATCGATTAACCCTATCTATC  712


> AT3G43580.1 | Symbols:  | Beta-galactosidase related protein 
| chr3:15502143-15503606 FORWARD LENGTH=1464
Length=1464

 Score = 80.5 bits (43),  Expect = 2e-14
 Identities = 55/61 (90%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  76   TTGAAGAAGAACGGCATTATGATCCCGCATCCAAGGAGCGGTGATTACCGAAGCTTCTTC  135
            ||||||||||||| |||||| |||||   || ||||||||||||||||||||||||||||
Sbjct  895  TTGAAGAAGAACGACATTATCATCCCATTTCTAAGGAGCGGTGATTACCGAAGCTTCTTC  954

Query  136  A  136
            |
Sbjct  955  A  955



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40940829805


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5