BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323657
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog... 893 0.0
AT5G66410.1 | Symbols: PLP3b | phosducin-like protein 3 homolog... 556 7e-158
> AT3G50960.1 | Symbols: PLP3a | phosducin-like protein 3 homolog
| chr3:18938697-18940428 REVERSE LENGTH=1020
Length=1020
Score = 893 bits (483), Expect = 0.0
Identities = 613/670 (91%), Gaps = 32/670 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCCAATGAGAAGGCGCAAGGA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 188 ATGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGA 247
Query 61 TCGAATCCTGTTAATGAAGAGGTTGATCTTGATGAACTTATGGATGATCCAGAGCTAGAA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCAAATCCTGTTAATGAAGAGGTTGATCTTGATGAACTTATGGATGATCCAGAGCTAGAA 307
Query 121 AGGTTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAAGTTGAGAAGAGAGAAGCGTTT 180
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 308 AGATTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAGGTTGAGAAGAGAGAATCGTTT 367
Query 181 AAAAGACAAGGACATGGTGAATATCGAGAGGTAAGCGAAGGAGATTTCTTGGGTGAAGTC 240
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 368 AAAAGACAAGGGCATGGTGAATATCGAGAGGTGAGTGAAGGAGATTTCTTGGGTGAAGTC 427
Query 241 ACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGATT 487
Query 301 ATGGACAAGCATCTGAAGACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAGTG 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATGGACAAGCATCTGAAAACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAGTG 547
Query 361 GACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACGTTGCCTTGCGTT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 548 GACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACTTTGCCTTGCGTT 607
Query 421 GTGCTTTTCAGCAAGGGAATCGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGGCACT 480
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 608 GTGCTTTTCAGCAAGGGAGTTGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGGAACC 667
Query 481 AAGGACGATTTCACCACGAATAAACTAGAGAACGTACTGTTAAGAGAATTTTTGCTTAAA 540
|||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 668 AAGGACGATTTCACAACGAATAAACTAGAGAACGTTCT-T--------------CTTAAA 712
Query 541 GAGTGCAAAT-CTTTATCAGGAATGCTCAGCAAGAAGAAGAAAGAGGAAGATGATGAAGA 599
|| | || | || ||| || | || ||||| | || || || ||||| | ||
Sbjct 713 AAGGG-AA-TGCT----CAGCAA-GA--AG-AAGAA-A-GAG-GAAGATGATGA--A-GA 756
Query 600 CGCTGAATATCAAGAGAGCATACGGCGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGA 659
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 757 CGCCGAATATCAAGAGAGCATACGGAGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGA 816
Query 660 TTCTGACTGA 669
||||||||||
Sbjct 817 TTCTGACTGA 826
> AT5G66410.1 | Symbols: PLP3b | phosducin-like protein 3 homolog
| chr5:26519770-26521696 FORWARD LENGTH=1069
Length=1069
Score = 556 bits (301), Expect = 7e-158
Identities = 446/516 (86%), Gaps = 10/516 (2%)
Strand=Plus/Plus
Query 2 TGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCCAATGAGAAGGCGCAAGGAT 61
||||||| ||||| ||| ||||| |||||||||||||||| ||||| ||||| |||||||
Sbjct 195 TGGCGGCAGCTGCTAGAGATTATAAAAAGGAAGTTCTTGCAAATGAAAAGGCACAAGGAT 254
Query 62 CGAA-TCCTGTTAATGAAGAGGTTGATCTTGATGAACTT-ATGGATGATCCAGAGCTAGA 119
| || ||||| || || || ||||||||||| ||| || ||||||||||||||||||||
Sbjct 255 C-AAGACCTGTCAACGAGGAAGTTGATCTTGACGAA-TTGATGGATGATCCAGAGCTAGA 312
Query 120 AAGGTTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAAGTTGAGAAGAGAGAAGCGTT 179
|| ||||||||||||||||||||||||||| | ||||||||| || ||||||||||| ||
Sbjct 313 AAAGTTGCACGCAGATAGGATTGCAGCACTCAGGAGAGAAGTGGAAAAGAGAGAAGCATT 372
Query 180 TAAAAGACAAGGACATGGTGAATATCGAGAGGTAAGCGAAGGAGATTTCTTGGGTGAAGT 239
||||||||||||||||||||||| ||||| || |||||||| || |||||||| |||||
Sbjct 373 CAAAAGACAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGCGACTTCTTGGGAGAAGT 432
Query 240 CACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGAT 299
||| |||||||| ||||| |||||||| |||||||| ||||| || || || ||||||||
Sbjct 433 CACAAGGAGTGAAAAAGTTATATGTCACTTCTACCACAAGGAGTTCTATCGCTGCAAGAT 492
Query 300 TATGGACAAGCATCTGAAGACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAA-AG 358
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 493 AATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGA- 551
Query 359 TGGACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACGTTGCCTTGCG 418
||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| || |
Sbjct 552 TGGACGCTGAGAACGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCGTGTG 611
Query 419 TTGTGCTTTTCAGCAAGGGAATCGCGATGGATAGGCTAGTTGGGTTCCAGGATCT-GG-G 476
|| | ||||| |||||||||||||||||||||||||| || ||||| || ||||| || |
Sbjct 612 TTATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGGTTTCAAGATCTAGGTG 671
Query 477 CACTAAGGACGATTTCACCACGAATAAACTAGAGAA 512
| | |||||||||||| |||||| || || |||||
Sbjct 672 C-C-AAGGACGATTTCTCCACGACGAAGCTGGAGAA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5