BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323669
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 | ch... 1038 0.0
AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 | ch... 124 1e-27
> AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 |
chr3:18973213-18974892 FORWARD LENGTH=1297
Length=1297
Score = 1038 bits (562), Expect = 0.0
Identities = 827/946 (87%), Gaps = 53/946 (6%)
Strand=Plus/Plus
Query 1 ATGGAAAGTGTTGAATTGGCGTTGAAGAACAGTAACAGGAAAGACAAAACCCTCACCGTC 60
||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 135 ATGGAGAGTGTTGAATTGACGTTGAAGAACAGTAACATGAAAGACAAAACCCT-A----- 188
Query 61 ACCGGCGGCGCTCAAAATGGGGAAGATTTCTCCGTCGACGACTTGCTTGACTTCTC--TA 118
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 189 ACCGGCGGCGCTCAAAATGGCGATGATTTCTCCGTCGACGACTTGCTTGACTTCTCAAAA 248
Query 119 -ACGAAGACGACGACGACGTTTTCGTTGAGGATGAGACTGAATTGAAAGTACAAAGAAAA 177
| ||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 249 GAAGAAGAAGACGACGACGTTTTGGTTGAGGATGAGGCTGAATTGAAAGTACAACGAAAA 308
Query 178 AGAGGAGTCTCTGACGAAATTACCCTTCACCGGACCAACGATTTCTCCACCGCCGATTTC 237
||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 309 AGAGGAGTCTCTGACGAAAATACCCTTCACCGGAGCAACGATTTCTCCACCGCTGATTTC 368
Query 238 CCCACAAGCGAGCTCGCCGTTCCGATGGATGATTTAGCGGAACTTGAATGGTTGTCAAAT 297
| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 369 CACACTAGCGGGCTTTCCGTTCCGATGGATGATATAGCGGAACTTGAATGGTTATCAAAT 428
Query 298 TTCGTAGAGGATTCTTCTTTCACGCCGTATT-TGGCTCCGACGAAGAAACCGGTTTGGTT 356
|||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 429 TTCGTAGATGATTCTTCTTTCACGCCGTATTCT-GCTCCGACGAATAAACCGGTTTGGTT 487
Query 357 AACCGGAAATCGGAGACATCCTGTACCATCGGTTAAAGAAGAGACCTGCTTCAAAGCTCC 416
|||||||||||||||||||| ||||| | |||||||||| ||||||||||||||| | ||
Sbjct 488 AACCGGAAATCGGAGACATCTTGTACAACCGGTTAAAGAGGAGACCTGCTTCAAATC-CC 546
Query 417 TCC-TCCT-CCGGTTAAAACCAGGCCCAAACGAGTCAGAACCGGAGTCACCGGCTGGTCT 474
| ||| ||| | |||||||| |||||||||| |||||||||||||| | |||||||
Sbjct 547 AACATCCGGCCG-TCAAAACCAGACCCAAACGAGCCAGAACCGGAGTCAGAGTCTGGTCT 605
Query 475 CATGGTTCG--G-----A-C----TCATCTTCCAGTTCTACAACATCGTCGTCTTCCTCT 522
||||||||| | | | |||||||| || ||||||||||| ||||| ||||||
Sbjct 606 CATGGTTCGCAGTCGTTAACCGACTCATCTTCAAGCTCTACAACATCTTCGTCGTCCTCT 665
Query 523 TCTGGTCCTTCAAGCCCTCTATGGCTCGCCGGCGCTGAGTTTCTTGATGAGTCAGTGGCT 582
|| |||||||||||||||||||||||||| ||| | |||||||||||||| || || ||
Sbjct 666 CCTCGTCCTTCAAGCCCTCTATGGCTCGCCAGCGGTCAGTTTCTTGATGAGCCAATGACT 725
Query 583 AAAACACagaagaagaagaagaagaagaagaagGTTTGGAAAAACTCTGGTCAGACGCAG 642
|||||||| || | ||||||||| | | ||||||||||| |||||||||||||
Sbjct 726 AAAACACA-AA-A-GAAGAAGAA-A-G-------TTTGGAAAAACGCTGGTCAGACGCAA 773
Query 643 ACGCAAACGCAAACGCAGACTCAAACGCAGGGGAGGCGGTGTGGTCATTGTGGCGTTCAG 702
||||||||||| |||||||| || || || |||||||||||||| ||||||
Sbjct 774 ACGCAAACGCAGACGCAGAC------GC-GGC-AG----TGTGGTCATTGTGGAGTTCAG 821
Query 703 AAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCTAAGACGTTGTGTAATGCGTGTGGT 762
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 822 AAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCGAAGACGTTGTGTAATGCGTGTGGT 881
Query 763 GTGCGTTACAAATCAGGTCGGTTATTACCCGAATATAGACCCGCTTGTAGCCCAAC-TTT 821
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 882 GTGCGTTACAAATCGGGTCGGTTACTACCCGAATATAGACCCGCTTGTAGCCCAACATTT 941
Query 822 CTCGAGTGAGCTTCACTCCAACCACCACCGTAAAGTCATTGAGATGCGTCGGAAGAAGGA 881
||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 942 -TCGAGTGAGCTTCACTCAAACCACCACAGTAAAGTCATTGAGATGCGTAGGAAGAAAGA 1000
Query 882 GGCTTCTGATGATGCTGATCAAACCGGTTTGAACCAGCCGGTTCAG 927
| ||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 1001 GACTTCTGACGGTGCTGAAGAAACCGGTTTGAACCAGCCGGTTCAG 1046
> AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 |
chr4:17147196-17148221 REVERSE LENGTH=907
Length=907
Score = 124 bits (67), Expect = 1e-27
Identities = 150/189 (79%), Gaps = 9/189 (5%)
Strand=Plus/Plus
Query 675 GAGGCGGTG-TG--GTCATTGTGGCGTTCAGAAAACGCCGCAGTGGAGAGCAGGACCATT 731
||||||||| || | |||||||| || ||||| ||||| || |||||| || |||||
Sbjct 496 GAGGCGGTGCTGCAGCCATTGTGGAGTCCAGAAGACGCCTCAATGGAGAATGGGTCCATT 555
Query 732 AGGAGCTAAGACGTTGTGTAATGCGTGTGGTGTGC-GTTACAAATCAGGTCG-GTTATTA 789
||| || ||||| |||||||||| ||||| || | ||| || || ||||| || |||
Sbjct 556 AGGTGCGAAGACACTGTGTAATGCTTGTGGGGTCCGGTT-TAAGTCGGGTCGACTT-TTA 613
Query 790 CCCGAATATAGACCCGCTTGTAGCCCAACTTTCTCGAGTGAGCTTCACTCCAAC-CACCA 848
||||||||||||||||||||||||||||| ||| | | ||| ||||||| ||| | | |
Sbjct 614 CCCGAATATAGACCCGCTTGTAGCCCAACATTCACCAACGAGATTCACTCTAACTCTC-A 672
Query 849 CCGTAAAGT 857
||| |||||
Sbjct 673 CCGGAAAGT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5