BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323672
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1812 0.0
AT5G45990.1 | Symbols: | crooked neck protein, putative / cell... 1212 0.0
AT5G41770.1 | Symbols: | crooked neck protein, putative / cell... 1038 0.0
AT3G13210.1 | Symbols: | crooked neck protein, putative / cell... 887 0.0
> AT3G51110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18983626-18985848 FORWARD LENGTH=2223
Length=2223
Score = 1812 bits (981), Expect = 0.0
Identities = 1220/1330 (92%), Gaps = 37/1330 (3%)
Strand=Plus/Plus
Query 559 TTGTGTACGAACGCGCCATT--GA-G-----AGACGTTGAAGAAGAAGCTGAGATGATCT 610
|||||||||||||||||||| || | |||||| ||||||||||||||||||||||
Sbjct 765 TTGTGTACGAACGCGCCATTGAGATGCTTAAAGACGTCGAAGAAGAAGCTGAGATGATCT 824
Query 611 TTGTGGCCTTTGCTGAGTTTGAAGAAGGGTGCAAAGAAGTGGAACGGGCTAGGTTTCTTT 670
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 825 TTGTGGCCTTTGCTGAGTTTGAAGAACTATGTAAAGAAGTGGAACGGGCTAGGTTTCTTT 884
Query 671 ACAAGTTTGCTCTTGATCATATCCCTAAAGGAAGAGCTGAGGATTTGTATAACAAGTTTG 730
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 885 ACAAGTATGCTCTTGATCATATCCCTAAAGGAAGAGCTGAGGATTTGTACAAGAAGTTTG 944
Query 731 TGGCGTTTGAGAAACAGTATGGGGATAAGGAAGGGATTGATGATGCCATTGTTGGCAAGA 790
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||
Sbjct 945 TGGCGTTTGAGAAGCAGTATGGGAATAAGGAAGGTATTGATGATGCCATTGTTGGCAGGA 1004
Query 791 GAAAGCTT-CTGTATGAAGGTGAAGTGAGGAAGAACCCTTTGAACTATGATTCCTGGTTC 849
||||| || | |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1005 GAAAG-TTACAGTATGAAGGTGAAGTGAGGAAGAACCCTTTGAACTACGATTCTTGGTTC 1063
Query 850 GATTACATTAGGTTGGAGGAGACTTTGGGGAATAAAGATAGGATCAGAGATCTCTATGAG 909
||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1064 GATTACATTAGCTTAGAGGAGACTTTGGGGGATAAAGATAGGATCAGAGAAGTCTATGAG 1123
Query 910 AGGGCTATTGCTAATGTTCCACCCGCCCAGGAGAAACGATACTGGCAGAGATATATCTAC 969
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1124 AGGGCTATTGCTAATGTTCCACTCGCTGAGGAGAAACGATACTGGCAGAGATATATCTAC 1183
Query 970 TTGTGGATTGATTATGCACTGTTTGAAGAGATTGTAGCTGAAGACGTGGAGCGTACTCGA 1029
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 TTGTGGATTGATTATGCACTGTTTGAAGAGATTCTAGCTGAAGACGTGGAGCGTACTCGA 1243
Query 1030 GCTGTGTACAGAGAATGCCTTC--TGCTTATCCCG-CACTCCAAATTCTCTTTTGCCAAG 1086
|||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 1244 GCTGTGTACAGAGAATGCCT-CAAT-CTTATCCCCTCACTCCAAATTCTCTTTTGCCAAG 1301
Query 1087 ATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAACTGAATCTCTCCGGTGCTCGGCAG 1146
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 1302 ATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAATTGAATCTCTCGGGTGCTCGGCGG 1361
Query 1147 ATATTAGGAAACGCCATTGGCAAAGCTCCAAAGCATAAGATTTTCAAGAAATACATTGAG 1206
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 ATACTAGGAAACGCCATTGGCAAAGCTCCAAAGCATAAGATTTTCAAGAAATACATTGAG 1421
Query 1207 ATCGAACTCCGCTTGGGAAACATAGATAGATGTAGAAAACTGTACACGCGGTATCTTGAA 1266
|| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1422 ATTGAACTCCACTTGGGAAACATAGATAGATGTAGAAAGCTGTATGCGCGGTATCTTGAA 1481
Query 1267 TGGTCTCCTGAGAGTTGCTATGGT---ATCTTGAATGGTCTCCT-GAGAGTTGCTAT-GC 1321
|||||||||||||||||||||| | | | | || | | ||||| | || | ||
Sbjct 1482 TGGTCTCCTGAGAGTTGCTATGCTTGGACCAAGTTTGCTGAGTTTGAGAGGT-CTCTTGC 1540
Query 1322 TTGGATCAAAACGAGCTAGAGCTATTTTTGAACTTGCAATATCTCAGCCTGTTCTTGACA 1381
| | | || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1541 T-GAAACAGAACGAGCTAGAGCTATTTTTGAGCTTGCAATATCTCAGCCTGTTCTTGACA 1599
Query 1382 CCCCCGAGCTGCTATGGAAGGCATACATTGATTTTGAGATATCACTAGGGGAATTAGAGA 1441
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1600 CCCCCGAGCTGCTATGG--GGCATACATTGACTTTGAGATATCACTAGGGGAATTAGAGA 1657
Query 1442 GGACACGAGCTTTATATGAGCGACTCTTGGACCGTACAAAGCATTACAAGGTGTGGCTTA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GGACACGAGCTTTATATGAGCGACTCTTGGACCGTACAAAGCATTACAAGGTGTGGCTTA 1717
Query 1502 GTTTTGCAAAGTTTGAAGCTTCTGCTGCTCAAGAT-ACTGATGTTATTCTTGAACACGCC 1560
||||||||||||||||||||||||||||||||| | || | || | ||||||| |||
Sbjct 1718 GTTTTGCAAAGTTTGAAGCTTCTGCTGCTCAAGGCCAA-GAAGATACTATTGAACATGCC 1776
Query 1561 AGAGC-GATTTTCGATAGAGCCAACACATACTACAAAGAGTCCAAACCGGAGCTCAAGGA 1619
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1777 AGAGCAG-TTTTCGATAGAGCCAACACATACTACAAAGAGTCGAAACCGGAGCTCAAGGA 1835
Query 1620 AGAACGAGCTAAGCTGTTGGAGGATTGGCTGAACATGGAGGCCAGCTTTGGTATTCCCGG 1679
|||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1836 AGAACGAGCTAACCTGTTGGAAGATTGGCTGAACATGGAGGCTAGCTTTGGT------G- 1888
Query 1680 GGATGTTAGTGCTGTTCAATCGAAGCTCCCAAAGAAGCTCAAGAAGAGAAAGCCAATCAC 1739
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1889 --ATGTTAGTGCTGTTCAATCGAAGCTCCCCAAGAAGCTCAAGAAGAGAATGCCAATCAC 1946
Query 1740 TAGAGAAGACGGTGAAACAGAGTATGAAGAATACATTGATTATTTGTTCCCAGAAGAATC 1799
||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 1947 TAGAGAAGACGGTGAGACAGAGTATGAAGAGTACATTGATTACTTCTTCCCTGAAGAATC 2006
Query 1800 ACAGACGATGAATCTCAAGATTCTTGAAGCTGCTCATAAATGGAAGAAGCAGAAGGTTGC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2007 ACAGACGATGAATCTCAAGATTCTTGAAGCTGCTCATAAATGGAAGAAGCAGAAGGTCGA 2066
Query 1860 TGCTTTCTGA 1869
||||||||||
Sbjct 2067 TGCTTTCTGA 2076
Score = 355 bits (192), Expect = 8e-97
Identities = 308/358 (86%), Gaps = 31/358 (9%)
Strand=Plus/Plus
Query 1 ATGATTCTAAGGA---TAAAGAATAAAACACCTGCGCCGCTACAAATCACGTCGGAGCAG 57
||||||| ||||| | ||||| ||||| ||||| ||| | ||||||||| ||||||||
Sbjct 92 ATGATTCCAAGGATGGTTAAGAACAAAACCCCTGCTCCGGTTCAAATCACGGCGGAGCAG 151
Query 58 ATTTTGAGGGAGGCgagagagagagagGACACTCGC--CC-GAGGCCGCCTAAACAGAAG 114
|||||| ||||||||||||||||||||||| |||| || | |||||||||||||||||
Sbjct 152 GTTTTGAAGGAGGCGAGAGAGAGAGAGGACAGTCGCATCCTGCGGCCGCCTAAACAGAAG 211
Query 115 ATCACAGATTCGGCTGAGCTTACGGACTACAGACTGCGACTAGAAGAATTGGTACTCCGA 174
||||||||||||| ||||||| | | | || | | | | | |||||||
Sbjct 212 ATCACAGATTCGGATGAGCTT---G-C--C-GA----G--T---A-CA---G-ACTCCGA 250
Query 175 CGTCGGAAGGAGTTTGAGGACAAGATCCGCGGCGCAAAAACGAAC-AATCAAGTTTGGGT 233
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 251 CGTCGGAAGGAGTTTGAGGACCAGATCCGCGGCGCAAAAACGAACTCA-CAAGTTTGGGT 309
Query 234 GAGGTATGCGGATTGGGAAGAGTCGCAGAAGGATCACGATCGTGCTCGGAGCGTTTGGGA 293
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 310 GAGGTATGCTGATTGGGAAGAGTCTCAGAAGGATCACGATCGTGCTCGGAGCGTGTGGGA 369
Query 294 ACGAGCTTT-GAGAGACGAGAGTTACAGGAACCATACGCTCTGGCTCAAATACGCAGA 350
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACGAGCTTTGGA-AGACGAGAGTTACAGGAACCATACGCTCTGGCTCAAATACGCAGA 426
Score = 315 bits (170), Expect = 1e-84
Identities = 197/210 (94%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 353 TATTCACATGGAGGAGATACTTGGGAATATCGCCGGAGCTAGAGAGGTATTTGAACGGTG 412
|||||||||||||||||||||||| ||||||| |||||||||| || | |||||||||||
Sbjct 523 TATTCACATGGAGGAGATACTTGGTAATATCGACGGAGCTAGAAAGATTTTTGAACGGTG 582
Query 413 GATGGTTTGGTCACCGGATCAACAAGCTTGGCTCTCTTTTATCAAATTCGAACTTAGGTA 472
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 583 GATGGATTGGTCACCAGATCAACAAGCTTGGCTCTGTTTTATCAAATTCGAACTTAGGTA 642
Query 473 TAACGAAATCGAACGCG-CAAGATCGATTTACGAGAGATTTGTGCTTTGCCATCCAAAAG 531
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 643 TAACGAAATCGAACG-GTCAAGATCGATTTACGAGAGATTTGTGCTTTGCCATCCTAAAG 701
Query 532 CTTCTTCCTTTATTCGATATGCCAAGTTTG 561
||||||||||||||||||| || |||||||
Sbjct 702 CTTCTTCCTTTATTCGATACGCAAAGTTTG 731
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1288 GGTATCTTGAATGGTCTCCTGAGAGTTGCTATGCTTGGATCAA 1330
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1471 GGTATCTTGAATGGTCTCCTGAGAGTTGCTATGCTTGGACCAA 1513
> AT5G45990.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr5:18651324-18653892 FORWARD
LENGTH=2022
Length=2022
Score = 1212 bits (656), Expect = 0.0
Identities = 1076/1277 (84%), Gaps = 35/1277 (3%)
Strand=Plus/Plus
Query 592 GAAGAAGCTGAGATGATCTTTGTGGCCTTTGCTGAGTTTGAAGAAGGGTGCAAAGAAGTG 651
|||||||||||||| ||||||| | |||||||| || |||||| | ||||| |||||
Sbjct 739 GAAGAAGCTGAGATTCTCTTTGTATCGTTTGCTGAATTCGAAGAACGATGCAAGGAAGTA 798
Query 652 GAACGGGCTAGGTTTCTTTACAAGTTTGCTCTTGATCATATCCCTAAAGGAAGAGCTGAG 711
|| |||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 799 GAGCGGGCTAGGTTTATCTACAAGTTTGCTCTTGATCATATTCGTAAAGGAAGAGCTGAG 858
Query 712 GATTTGTATAACAAGTTTGTGGCGTTTGAGAAACAGTATGGGGATAAGGAAGGGATTGAT 771
|| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 859 GAGTTGTACAAGAAGTTTGTGGCGTTTGAGAAACAGTATGGAGATAAGGAAGGTATTGAG 918
Query 772 GATGCCATTGTTGGCAAG-AGAAAGCTTCTGTATGAAGGTGAAGTGAGGAAGAACCCTTT 830
||||| |||||||| ||| || | | || |||||||| ||||||||| || ||||||||
Sbjct 919 GATGCTATTGTTGGGAAGAAG-AGGTTTGAGTATGAAGATGAAGTGAGTAAAAACCCTTT 977
Query 831 GAACTATGATTCCTGGTTCGATTACATTAGGTTGGAGGAGACT-TTGGGGAATAAAGATA 889
||||||||| || ||||||||||| ||||| |||| |||| | || ||||| |||||||
Sbjct 978 GAACTATGACTCATGGTTCGATTATGTTAGGCTGGAAGAGAGTGTT-GGGAACAAAGATA 1036
Query 890 GGATCAGAGATCTCTATGAGAGGGCTATTGCTAATGTTCCACCCGCCCAGGAGAAACGAT 949
|||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1037 GGATAAGAGAAATCTATGAGAGGGCTATTGCTAATGTTCCACCTGCCCAAGAGAAACGAT 1096
Query 950 ACTGGCAGAGATATATCTA-CTTGTGGATTGATTATGCACTGTTTGAAGAGATTGTAGCT 1008
|||||| ||||| || || ||| |||||| ||||||| ||| ||||||||||| | ||
Sbjct 1097 TCTGGCAAAGATACATTTATCTT-TGGATTAATTATGCTTTGTATGAAGAGATTGAAACT 1155
Query 1009 GAAGACGTGGAGCGTACTCGAGCTGTGTACAGAGAATGCCTTCT-GCTTATCCCGCACTC 1067
|||| ||||| ||||| |||| ||| ||||||||||| || | ||||||||| ||| |
Sbjct 1156 AAAGATGTGGAACGTACACGAGATGTTTACAGAGAATGTCT-CAAGCTTATCCCACACAC 1214
Query 1068 CAAATTCTCTTTTGCCAAGATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAACTGAA 1127
|||||| ||||||||||| |||||||||||||||||| | | ||| ||||||||| ||||
Sbjct 1215 CAAATTTTCTTTTGCCAAAATATGGTTGCTCGCTGCAGAATATGAAATCAGGCAATTGAA 1274
Query 1128 TCTCTCCGGTGCTCGGCAGATATTAGGAAACGCCATTGGCAAAGCTCCAAA-GCATAAGA 1186
|||| ||||||| |||||||||||||| || || ||||| ||||||||||| | |||||
Sbjct 1275 TCTCACCGGTGCACGGCAGATATTAGGTAATGCGATTGGGAAAGCTCCAAAAGT-TAAGA 1333
Query 1187 TTTTCAAGAAATACATTGAGATCGAACTCC-GCTTGGGAAACATAGATAGATGTAGAAAA 1245
| |||||||||||||||||||| |||||| | |||| |||||| |||||||||||||||
Sbjct 1334 TATTCAAGAAATACATTGAGATGGAACTCAAG-TTGGTAAACATCGATAGATGTAGAAAA 1392
Query 1246 CTGTAC-ACGCGGTATCTTGAATGGTCTCCTGAGAGTTGCTATGGTATCTTGAATGGTCT 1304
| ||| | ||||| |||||||||||||||||||| |||||||| | | ||| | |
Sbjct 1393 TTATACGA-GCGGTTTCTTGAATGGTCTCCTGAGAATTGCTATGCT-TGGAGAAAC-TAT 1449
Query 1305 CCTGAGAGTTGCTAT---GCTTG--GAT-CAAAACGAGCTAGAGCTATTTTTGAACTTGC 1358
||||| ||| || ||||| || || |||| ||||||||||| |||||||||||
Sbjct 1450 GCTGAGT-TTGAGATTTCGCTTGCTGAAACAGAACGTGCTAGAGCTATCTTTGAACTTGC 1508
Query 1359 AATATCTCAGCCTGTTCTTGACACCCCCGAGCTGCTATGGAAGGCATACATTGATTTTGA 1418
|||||||||||||| ||| |||| || |||||||| |||||| | ||||||||||||||
Sbjct 1509 AATATCTCAGCCTGCTCTAGACATGCCTGAGCTGCTTTGGAAGACGTACATTGATTTTGA 1568
Query 1419 GATATCACTAGGGGAATTAGAGAGGACACGAGCTTTATATGAGCGACTCTTGGACCGTAC 1478
||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||
Sbjct 1569 GATATCAGAAGGGGAATTCGAGAAGACACGGGCTTTATATGAGCGACTCTTGGACCGTAC 1628
Query 1479 AAAGCATTACAAGGTGTGGCTTAGTTTTGCAAAGTTTGAAGCTTCTGCTGCTCAAGATAC 1538
|||||||| |||||||||| |||| ||||||||||| |||||||||||| | || | |
Sbjct 1629 AAAGCATTGCAAGGTGTGGATTAGCTTTGCAAAGTTCGAAGCTTCTGCTTCAGAACACAA 1688
Query 1539 TGATGTTATTCTTGAACA-CGCCAGAGCGATTTTCGATAGAGCCAACACATACTACAAAG 1597
|| | | | || | |||||||| ||| ||||| |||||||| |||||||||||||
Sbjct 1689 AGAAGACGG-CATCAAAAGCGCCAGAGTGATCTTCGACAGAGCCAATACATACTACAAAG 1747
Query 1598 AGTCCAAACCGGAGCTC-AAGGAAGAACGAGCTAAGCTGTTGGAGGATTGGCTGAACATG 1656
| ||| ||||||||| ||| |||| || |||| ||| |||||||||||||| ||||||
Sbjct 1748 ACACCACACCGGAGCTTGAAG-AAGAGCGTGCTACGCTTTTGGAGGATTGGCTTAACATG 1806
Query 1657 GAGGCCAG-CTTTGGT-ATTCCCGGGGATGTTAGTG-CTGTTCAATCGAAGCTCCCAAAG 1713
||| | || ||||||| | | |||||||||||||| | |||||||| |||||||| |||
Sbjct 1807 GAGAC-AGGCTTTGGTGAG-CTCGGGGATGTTAGTGTC-GTTCAATCAAAGCTCCCGAAG 1863
Query 1714 AAGCTCAAGAAGAGAAAGCCAATCACTAGAGAAGACGG-TGAAACAGAGTATGAAGAATA 1772
|||||||||||||||||| | || |||||||||||| | | ||||||||||||||||
Sbjct 1864 AAGCTCAAGAAGAGAAAGATGACCAGTAGAGAAGACGGCTCTA-CAGAGTATGAAGAATA 1922
Query 1773 CATTGATTATTTGTTCCCAGAAGAATCACAGACGATGAATCTCAAGATTCTTGAAGCTGC 1832
| |||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1923 CTTTGATTATCTGTTCCCTGAAGAATCAGGGACGACGAATCTCAAGATTCTTGAAGCTGC 1982
Query 1833 TCATAAATGGAAGAAGC 1849
| |||||||||||||||
Sbjct 1983 TTATAAATGGAAGAAGC 1999
> AT5G41770.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr5:16717996-16721222 FORWARD
LENGTH=2429
Length=2429
Score = 1038 bits (562), Expect = 0.0
Identities = 824/951 (87%), Gaps = 15/951 (2%)
Strand=Plus/Plus
Query 588 TGAAGAAGAAGCTGAGATGATCTTTGTGGCCTTTGCTGAGTTTGAAGAAGGGTGCAAAGA 647
||| |||||||||||||| |||||||||| |||||||||||||||||| | || || ||
Sbjct 799 TGATGAAGAAGCTGAGATCCTCTTTGTGGCGTTTGCTGAGTTTGAAGAACGTTGTAAGGA 858
Query 648 AGTGGAACGGGCTAGGTTTCTTTACAAGTTTGCTCTTGATCATATCCCTAAAGGAAGAGC 707
||||||| ||||||||||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 859 AGTGGAAAGGGCTAGGTTTATCTATAAGTTTGCTCTTGATCATATTCCTAAAGGAAGAGC 918
Query 708 TGAGGATTTGTATAACAAGTTTGTGGCGTTTGAGAAACAGTATGGGGATAAGGAAGGGAT 767
|||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 919 TGAGGATTTGTATAGGAAGTTTGTTGCTTTTGAGAAACAGTATGGTGATAAGGAAGGGAT 978
Query 768 TGATGATGCCATTGTTGGCAAGAGAAAGCTTCTGTATGAAGGTGAAGTGAGGAAGAACCC 827
||| |||||||||||||| ||||| | | ||| |||||||| |||||||||||||| ||
Sbjct 979 TGAGGATGCCATTGTTGGGAAGAGGAGGTTTCAGTATGAAGATGAAGTGAGGAAGAGTCC 1038
Query 828 TTTGAACTATGATTCCTGGTTCGATTACATTAGGTTGGAGGAGACTTTGGGGAATAAAGA 887
|| ||||||||||| ||||||||||| ||||||| || |||| | ||||||| |||||
Sbjct 1039 TTCCAACTATGATTCGTGGTTCGATTATGTTAGGTTAGAAGAGAGTGTGGGGAACAAAGA 1098
Query 888 TAGGATCAGAGATCTCTATGAGAGGGCTATTGCTAATGTTCCACCCGCCCAGGAGAAACG 947
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1099 TAGGATCAGAGAAATCTATGAGAGGGCTATTGCTAATGTTCCACCTGCTGAGGAGAAACG 1158
Query 948 ATACTGGCAGAGATATATCTA-CTTGTGGATTGATTATGCACTGTTTGAAGAGATTGTAG 1006
||||||||| ||||||||||| || |||||| |||||||| | ||||||||||||| |
Sbjct 1159 ATACTGGCAAAGATATATCTATCTC-TGGATTAATTATGCATTATTTGAAGAGATTGAAA 1217
Query 1007 CTGAAGACGTGGAGCGTACTCGAGCTGTGTACAGAGAATGCCTTCTGCTTATCCCGCACT 1066
||||||| | |||||||| |||| ||| |||||||| |||||| ||||||||| |||
Sbjct 1218 CTGAAGATATTGAGCGTACCCGAGATGTTTACAGAGAGTGCCTTAAGCTTATCCCCCACA 1277
Query 1067 CCAAATTCTCTTTTGCCAAGATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAACTGA 1126
|||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| |||
Sbjct 1278 GCAAATTTTCTTTTGCCAAAATATGGTTGCTCGCTGCTCAGTTTGAGATAAGGCAATTGA 1337
Query 1127 ATCTCTCCGGTGCTCGGCAGATATTAGGAAACGCCATTGGCAAAGCTCC-AAAGCATAAG 1185
||||| | |||||||| |||||||||||||| || ||||| |||||||| |||| |||||
Sbjct 1338 ATCTCACGGGTGCTCGCCAGATATTAGGAAATGCGATTGGAAAAGCTCCCAAAG-ATAAG 1396
Query 1186 ATTTTCAAGAAATACATTGAGATCGAACTCC-GCTTGGGAAACATAGATAGATGTAGAAA 1244
|| ||||||||||||||||||||||| || | | ||||||||||| ||||| ||||||||
Sbjct 1397 ATATTCAAGAAATACATTGAGATCGAGCTTCAG-TTGGGAAACATGGATAGGTGTAGAAA 1455
Query 1245 ACTGTAC-ACGCGGTATCTTGAATGGTCTCCTGAGAGTTGCTATGGT---ATCTTGAATG 1300
| || | ||||||||||| ||||||||||||| |||||||| | | | | |||
Sbjct 1456 GTTATATGAA-CGGTATCTTGAGTGGTCTCCTGAGAATTGCTATGCTTGGAGCAAGTATG 1514
Query 1301 GTCTCCT-GAGAGTTGCTAT-GCTTGGATCAAAACGAGCTAGAGCTATTTTTGAACTTGC 1358
| || ||||| | || | | ||| | || ||||||||||||||||||||||||||||
Sbjct 1515 CTGAACTAGAGAGGT-CTCTTG-TTGAAACAGAACGAGCTAGAGCTATTTTTGAACTTGC 1572
Query 1359 AATATCTCAGCCTGTTCTTGACACCCCCGAGCTGCTATGGAAGGCATACATTGATTTTGA 1418
|||||| ||||| | |||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1573 AATATCCCAGCCAGCTCTTGACATGCCTGAGCTGCTTTGGAAGGCATACATTGATTTTGA 1632
Query 1419 GATATCACTAGGGGAATTAGAGAGGACACGAGCTTTATATGAGCGACTCTTGGACCGTAC 1478
||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1633 GATATCAGAAGGGGAATTAGAGAGGACAAGGGCTTTATATGAGCGACTCTTGGACCGTAC 1692
Query 1479 AAAGCATTACAAGGTGTGGCTTAGTTTTGCAAAGTTTGAAGCTTCTGCTGC 1529
|||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1693 TAAGCATTACAAGGTGTGGGTTAGCTTTGCAAAGTTTGAAGCTTCTGCTGC 1743
Score = 381 bits (206), Expect = 1e-104
Identities = 281/316 (89%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 1558 GCCAGAGCGATTTTCGATAGAGCCAACACATACTACAAAGAGTCCAAACCGGAGCTCAAG 1617
|||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||| |||
Sbjct 1823 GCCAGAGCAATTTTCGATAGAGCCAACACATATTACAAAGACTCCACACCAGAGCTGAAG 1882
Query 1618 GAAGAACGAGCTAAGCTGTTGGAGGATTGGCTGAACATGGAG-GCCAGCTTTGGTATTCC 1676
||||||||||||| ||| |||||||||||||||||||||||| | |||||||||| ||
Sbjct 1883 GAAGAACGAGCTACGCTCTTGGAGGATTGGCTGAACATGGAGAG-TAGCTTTGGTA-ACC 1940
Query 1677 -CGGGGATGTTAGTGCTGTTCAATCGAAGCTCCCAAAGAAGCTCAAGAAGAGAAAGCCAA 1735
||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| | |
Sbjct 1941 TCGGGGATGTTAGTATTGTTCAATCGAAGCTTCCAAAGAAGCTCAAGAAAAGAAAGGCGA 2000
Query 1736 TCACTAGAGAAGAC-GGTGAAACAGAGTATGAAGAATACATTGATTATTTGTTCCCAGAA 1794
|||||||||||||| ||| ||||||||| ||||||||||| |||||||| | |||||||
Sbjct 2001 TCACTAGAGAAGACGGGT-CAACAGAGTACGAAGAATACATCGATTATTTATACCCAGAA 2059
Query 1795 GAATCACAGACGATGAATCTCAAGATTCTTGAAGCTGC-TCATAAATGGAAGAAGCAGAA 1853
||||| || || | |||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 2060 GAATCGCAAACAACGAATCTCAAGATTCTTGAAGCTGCAT-ACAAATGGAAGAAGCAGAA 2118
Query 1854 GGTTGCTGCTTTCTGA 1869
||||||||||| ||||
Sbjct 2119 GGTTGCTGCTT-CTGA 2133
Score = 237 bits (128), Expect = 3e-61
Identities = 184/211 (87%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 353 TATTCACATGGAGGAGATACTTGGGAATATCGCCGGAGCTAGAG-AGGTATTTGAACGGT 411
|||||| ||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 523 TATTCATATGGAGGAGATACTTGGGAATATCGCCGGAGCTAG-GCAGATTTTTGAACGGT 581
Query 412 GGATGGTTTGGTCACCGGATCAACAAGCTTGGCTCTCTTTTATCAAATTCGAACTTAGGT 471
|||||| |||||||||||||||||||| ||||||||| ||||| || |||||||||||||
Sbjct 582 GGATGGATTGGTCACCGGATCAACAAGGTTGGCTCTCGTTTATTAAGTTCGAACTTAGGT 641
Query 472 ATAACGAAATCGAACGCGCAAGATCGATTTACGAGAGATTTGTGCTTTGCCATCCAAAAG 531
|||| ||||| ||||| || ||| |||| |||||||||||||| ||||| ||||| || |
Sbjct 642 ATAATGAAATTGAACGTGCTAGAACGATATACGAGAGATTTGTTCTTTGTCATCCCAAGG 701
Query 532 CTTCTTCCTT-TATTCGATATGCCAAGTTTG 561
||| | || |||| ||||||| |||||||
Sbjct 702 TTTCGGC-TTATATTAGATATGCTAAGTTTG 731
> AT3G13210.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr3:4244921-4247846 FORWARD LENGTH=2123
Length=2123
Score = 887 bits (480), Expect = 0.0
Identities = 752/880 (85%), Gaps = 31/880 (4%)
Strand=Plus/Plus
Query 670 TACAAGTTTGCTCTTGATCATATCCCTAAAGGAAGAGCTGAGGATTTGTATAACAAGTTT 729
|||||||||||||||||||| || ||||||||||||||||| ||||||| | |||||||
Sbjct 721 TACAAGTTTGCTCTTGATCAGATTCCTAAAGGAAGAGCTGAAAATTTGTACAGCAAGTTT 780
Query 730 GTGGCGTTTGAGAAACAGTATGGGGATAAGGAAGGGATTGATGATGCCATTGTTGGCAAG 789
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||
Sbjct 781 GTGGCGTTTGAGAAACAGAATGGGGATAAGGAAGGGATTGAGGATGCCATTATTGGGAAG 840
Query 790 AGAAAGCT-TCTGTATGAAGGTGAAGTGAGGAAGAACCCTTTGAACTATGATTCCTGGTT 848
|| || | || |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 841 AG-GAGGTGTCAGTATGAAGATGAAGTGAGGAAGAACCCTTTGAACTATGATTCGTGGTT 899
Query 849 CGATTACATTAGGTTGGAGGAGACT-TTGGGGAATAAAGATAGGATCAGAGATCTCTATG 907
||||| | ||||||| || |||||| ||||| || ||||||||||| ||||| ||||||
Sbjct 900 CGATTTCGTTAGGTTAGAAGAGACTGTTGGG-AACAAAGATAGGATAAGAGAAATCTATG 958
Query 908 AGAGGGCTATTGCTAATGTTCCACC-C--G---CCCAGGAGAAACGATACTGGCAGAGAT 961
|||||||| |||||||||||||||| | | |||| ||||||||||||||||| ||||
Sbjct 959 AGAGGGCTGTTGCTAATGTTCCACCTCCCGAAGCCCAAGAGAAACGATACTGGCAAAGAT 1018
Query 962 ATATCTA-CTTGTGGATTGATTATGCACTGTTTGAAGAGATTGTAGCTGAAGACGTGGAG 1020
| || || || |||||| ||||||| | |||| |||||| ||| ||||||| ||||||
Sbjct 1019 ACATATATCTC-TGGATTAATTATGCTTTTTTTGCAGAGATGGTAACTGAAGATGTGGAG 1077
Query 1021 CGTACTCGAGCTGTGTACAGAGAATGCCTTCT-GCTTATCCCGCACTCCAAATTCTCTTT 1079
| || |||| ||| ||||||| |||||| | ||||||||| ||||||||||| |||||
Sbjct 1078 AGCACACGAGATGTTTACAGAGCATGCCT-CAAGCTTATCCCCCACTCCAAATTTTCTTT 1136
Query 1080 TGCCAAGATATGGTTGCTCGCTGCACAGTTTGAGATCAGGCAACTGAATCTCTCCGGTGC 1139
|||||| |||||||||||||||||||| ||| ||||||||| |||||||| | |||||
Sbjct 1137 TGCCAAAATATGGTTGCTCGCTGCACAACATGAAATCAGGCAATTGAATCTCACGGGTGC 1196
Query 1140 TCGGCAGATATTAGGAAACGCCATTGGCAAAGCTCCAAA-GCATAAGATTTTCAAGAAAT 1198
||||||||||||||||| || ||||| ||||||||||| | ||||||| ||||||||||
Sbjct 1197 ACGGCAGATATTAGGAAATGCGATTGGGAAAGCTCCAAAAG-ATAAGATATTCAAGAAAT 1255
Query 1199 ACATTGAGATCGAACTCC-GCTTGGGAAACATAGATAGATGTAGAAAACTGTAC-ACGCG 1256
|||||||||||||||||| | ||| |||| |||||||| ||||||||| | || | |||
Sbjct 1256 ACATTGAGATCGAACTCCAG-TTGAGAAATATAGATAGGTGTAGAAAATTATATGA-GCG 1313
Query 1257 GTATCTTGAATGGTCTCCTGAGAGTTGCTATGGTATCTTGAATGGTCTCCTGAG----AG 1312
|||||||||||||||||||| || |||||||| | | ||| | | ||||| ||
Sbjct 1314 GTATCTTGAATGGTCTCCTGGGAATTGCTATGCT-TGGAGAAAA-TATGCTGAGTTCGAG 1371
Query 1313 TTG-CTAT-GCTTGGATCAAAACGAGCTAGAGCTATTTTTGAACTTGCAATATCTCAGCC 1370
|| || | ||| | | || | ||| |||||||||| |||||||||||||||||||||||
Sbjct 1372 ATGTCTCTTGCT-GAAACAGAGCGAACTAGAGCTATCTTTGAACTTGCAATATCTCAGCC 1430
Query 1371 TGTTCTTGACACCCCCGAGCTGCTATGGAAGGCATACATTGATTTTGAGATATCACTAGG 1430
|| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 1431 TGCTCTAGACATGCCCGAGCTGCTATGGAAGACGTACATTGATTTTGAGATATCAGAAGG 1490
Query 1431 GGAATTAGAGAGGACACGAGCTTTATATGAGCGACTCTTGGACCGTACAAAGCATTACAA 1490
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||
Sbjct 1491 GGAATTAGAGAGGACACGGGCTTTATATGAGAGACTCTTGGACCGTACAAAGCATTGCAA 1550
Query 1491 GGTGTGGCTT-AGTTTTGCAAAGTTTGAAGCTTCTGCTGC 1529
||||||| || | ||| |||||||||||||| ||||||||
Sbjct 1551 GGTGTGGGTTGACTTT-GCAAAGTTTGAAGCGTCTGCTGC 1589
Score = 337 bits (182), Expect = 3e-91
Identities = 266/307 (87%), Gaps = 4/307 (1%)
Strand=Plus/Plus
Query 1553 AACACGCCAGAGCGATTTTCGATAGAGCCAACACATACTACAAAGAGTCCAAACCGGAGC 1612
||| |||||||| ||| ||||| ||||||||||||||| ||||||| |||| ||| ||||
Sbjct 1649 AACGCGCCAGAGAGATATTCGACAGAGCCAACACATACAACAAAGACTCCACACCAGAGC 1708
Query 1613 TCAAGGAAGAACGAGCTAAGCTGTTGGAGGATTGGCTGAACATGGAGGCCAGCTTTGGTA 1672
| || ||||| || |||| ||| |||||||||||||| ||||||||| | |||||||||
Sbjct 1709 TGAAAGAAGAGCGTGCTATGCTTTTGGAGGATTGGCTTAACATGGAGACGGGCTTTGGTA 1768
Query 1673 TTCCCGGGGATGTTAGTGCT-GTTCAATCGAAGCTCCCAAAGAAGCTCAAGAAGAGAAAG 1731
| |||||||||||| | | ||||||||||||||||| |||||| ||||||||||||||
Sbjct 1769 AGCTCGGGGATGTTAGAG-TCGTTCAATCGAAGCTCCCGAAGAAGGTCAAGAAGAGAAAG 1827
Query 1732 CCAATCACTAGAGAAGACGG-TGAAACAGAGTATGAAGAATACATTGATTATTTGTTCCC 1790
| | || ||||||||| || || ||||||||||||||||||| |||||||||||||||
Sbjct 1828 CTGAGCAGTAGAGAAGATGGCTG-TACAGAGTATGAAGAATACACTGATTATTTGTTCCC 1886
Query 1791 AGAAGAATCACAGACGATGAATCTCAAGATTCTTGAAGCTGCTCATAAATGGAAGAAGCA 1850
||||||||| |||| | || ||| |||||||||||||||||||||||||||||||||||
Sbjct 1887 CGAAGAATCAGAGACAACGAGTCTTAAGATTCTTGAAGCTGCTCATAAATGGAAGAAGCA 1946
Query 1851 GAAGGTT 1857
|||||||
Sbjct 1947 GAAGGTT 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92519604435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5