BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323679
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51190.1 | Symbols: | Ribosomal protein L2 family | chr3:19... 1275 0.0
AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | ... 693 0.0
> AT3G51190.1 | Symbols: | Ribosomal protein L2 family | chr3:19016606-19017547
REVERSE LENGTH=783
Length=783
Score = 1275 bits (690), Expect = 0.0
Identities = 753/783 (96%), Gaps = 6/783 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTGATTAGGGCACAGCGT-AAGG-G-TGCTGGTTCCGTTTTCAAGTCCCAC 57
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 1 ATGGGTCGTGTGATTAGGGCACAGCGTAAAGGTGCGGCTGGTTCCGTTTTCAAGTCCCAC 60
Query 58 ACTCACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGCGAGCGAAATGGT 117
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 ACCCACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGAGAGCGAAACGGT 120
Query 118 TACCTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCT 180
Query 178 CGCGTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAGCTGTTCGTAGCCGCC 237
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CGTGTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAACTGTTCGTAGCCGCC 240
Query 238 GAAGGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGT 300
Query 298 AACGTTCTTCCCCTTGGATCAATCCCTGAGGGAGCTGTTGTCTGCAATGTTGAGCTCCAT 357
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 301 AACGTTCTTCCCCTTGGATCAATCCCTGAGGGAGCTGTTATCTGTAACGTTGAGCTCCAT 360
Query 358 GTCGGTGACCGTGGCGCTCTCGCTAGGGCTTCTGGTGATTATGCCATCGTAATTGCTCAC 417
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTCGGTGACCGTGGTGCTCTCGCTAGGGCTTCTGGTGATTACGCCATCGTAATTGCTCAC 420
Query 418 AATCCTGACAGCAACACCACTAGGGTTAAGCTTCCTTCTGGATCGAAGAAGATTTTGCCA 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATCCTGAAAGCAACACCACTAGGGTTAAGCTTCCTTCTGGATCGAAGAAGATTTTGCCA 480
Query 478 AGTGCTTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCCACTT 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTGCGTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCCACTT 540
Query 538 CTCAAGGCTGGAAATGCATACCACAAGTTCAAAGTGAAGAGGAACTGTTGGCCTGTTGTG 597
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 541 CTCAAGGCTGGAAATGCATACCACAAGTACAAAGCGAAGAGGAACTGTTGGCCTGTTGTA 600
Query 598 CGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGTAACCATCAGCACATT 657
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 601 CGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGAAACCACCAGCACATT 660
Query 658 GGTCACGCCAGTACGGTTAGGCGTGATAAATCTGCTGGGGCTAAGGTTGGCCAAGTTGCT 717
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 661 GGTCACGCCAGTACGGTCAGGCGTGATAAATCTGCTGGTGCTAAGGTTGGTCAAATTGCT 720
Query 718 GCAAGGAGAACTGGTCGTCGTAGAGGTACAGCCGC-A--TTAGCAGCCAAGGCAGACTAC 774
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 721 GCAAGGAGAACTGGTCGTCGTAGAGGTGCAGCTGCCACATTAGCAGCCAAGGCAGACTAC 780
Query 775 TAG 777
|||
Sbjct 781 TAG 783
> AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family
| chr2:7837102-7838304 FORWARD LENGTH=970
Length=970
Score = 693 bits (375), Expect = 0.0
Identities = 653/786 (83%), Gaps = 23/786 (3%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTGATTAGGGCACAGCGTAAGGGTGCTGGTTCCGTTTTCAAGTCCCACACT 60
||||||||||| || || || || ||||||||||| |||||||| ||||| |||||||||
Sbjct 50 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 109
Query 61 CACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGCGAGCGAAATGGTTAC 120
||||||||||| ||||| ||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 110 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTAC 169
Query 121 CTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCTCGC 180
||||| || | ||||| || ||||||||||| || || |||||||||||||| |||||
Sbjct 170 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGT 229
Query 181 GTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAGCTGTTCGTAGCCGCCGAA 240
||| | ||||||||||||||||| | || ||| || |||||||| ||||| |||||||||
Sbjct 230 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAA 289
Query 241 GGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGTAAC 300
|||||||||||||| || | | | ||||| |||||||| |||| ||| | || || ||
Sbjct 290 GGTATGTACACCGGTCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAAT 349
Query 301 GTTCTTCCC-CTTGGATCAATCCCTGAGGGAGCTGTTGTCTGCAATGTTGAGC-TCCATG 358
|||| |||| ||| |||| || ||||| ||||||||||||||||| || |||| | || |
Sbjct 350 GTTC-TCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCAT-CACG 407
Query 359 TCGGTGACCGTGGCGCT-CTCGCTAGGGCTTCTGGTGATTATGCCATCGTAATTGCTCAC 417
||||||| ||||| | | |||||||| |||||||||||||| ||||| || || ||||||
Sbjct 408 TCGGTGATCGTGGTG-TCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCAC 466
Query 418 AATCCTGACAGCAACACCACTAGGGTTAAGCTT-CCTTCTGGATCGAAGAAGATTTTGCC 476
|| ||||||||| |||| |||||| ||||| || || || || |||||||||||| | ||
Sbjct 467 AACCCTGACAGCGACACTACTAGGATTAAG-TTGCCATCGGGTTCGAAGAAGATTGTCCC 525
Query 477 AAGTGCTTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCC-AC 535
||||| ||||| || |||||||| |||||||| || || |||||||| |||||||| |
Sbjct 526 AAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGA- 584
Query 536 TTCTCAAGGCTGGAAATGCATACCACAAGTTCAAAGTGAAGAGGAACTGTTGGCCTGTTG 595
| |||||||| ||||| || |||||||||| | ||||||||||||| |||||| |
Sbjct 585 TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGG 644
Query 596 TGCGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGTAACCATCAGCACA 655
| |||||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 645 TTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 704
Query 656 TTGGTCACGCCAGTACGGTTAGGCGTGATAAATCTGCTGGGGCT-AAGGTTGGCCA-AGT 713
|||||||||||||||| |||||||||||| | || |||| | |||||||| | | |
Sbjct 705 TTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGA-CAGAAGGTTGGTCTTA-T 762
Query 714 TGCTGCAAGGAGAACTGGTCGTCGT-AGAGGTACA-GC--C-GCATT-AGCAGCCAAGGC 767
|||||||||||| |||||||||| | |||||| || || | || || ||| ||||||||
Sbjct 763 TGCTGCAAGGAGGACTGGTCGTC-TCAGAGGT-CAAGCTGCTGC-TTCAGCTGCCAAGGC 819
Query 768 AGACTA 773
||||||
Sbjct 820 AGACTA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5