BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323685
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51270.1 | Symbols: | protein serine/threonine kinases;ATP ... 1807 0.0
> AT3G51270.1 | Symbols: | protein serine/threonine kinases;ATP
binding;catalytics | chr3:19033568-19036772 FORWARD LENGTH=1479
Length=1479
Score = 1807 bits (978), Expect = 0.0
Identities = 1120/1184 (95%), Gaps = 27/1184 (2%)
Strand=Plus/Plus
Query 233 ATGATGGATTCCGACTCACCTATCTCGGTTATGACTTTCTTGCCATTAAAACATTGGTCA 292
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 ATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCA 355
Query 293 ACCGTGGTGTATTTATCGGTGTTGGTCGTCAAATTGGTGTCGGTAAAGAGTCAGACATAT 352
|||| ||| |||||| |||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 356 ACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGTTGGTAAAGAGTCAGACATAT 415
Query 353 TTGAGGTCGCTCAGGAAGATGGAACTATTCTGGCAATGAAGTTACATAGACTAGGGAGAA 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 TTGAGGTCGCTCAGGAAGATGGAACTATTCTAGCAATGAAGTTACATAGACTAGGGAGAA 475
Query 413 CCTCCTTTAGGGCTGTCAAGTCTAAGCGTGACTACTTGAGGCATCGTAGTAGTTTCAGCT 472
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 476 CCTCCTTTAGGGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCT 535
Query 473 GGTTGTATCTCTCTCGACTTGCAGCTCTCAAGGAATTTGCTTTTATGAAGGCTTTGGAAG 532
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 GGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGGCTTTGGAAG 595
Query 533 AACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGGCATTGTGTTATCATGTCCC 592
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 AACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCATGTCCC 655
Query 593 TTGTGCAAGGTTACCCCATGGTTCAGGTGAAGCAGTTACAGAATCCTGAGACAATTTTTG 652
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 656 TTGTGCAAGGTTACCCCATGGTTCAGGTGAAGCAATTACAGAACCCTGAGACAATTTTCG 715
Query 653 AGAAGATCATTGGCATTGTTGTTCGTTTGGCTGAGCACGGTCTAATTCACTGTGACTTCA 712
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 716 AGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCA 775
Query 713 ATGAGTTTAACATCATGATTGATGATGAAGAGAAGATAACAATGATCGACTTTCCACAAA 772
|||| || |||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 776 ATGAATTCAACATCATGATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAA 835
Query 773 TGGTTTCTGTTTCACACCGAAATGCACAAATGTACTTTGACCGTGATATCGAATGCATCT 832
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGTATCTGTTTCACACCGAAATGCACAAATGTACTTTGACCGTGATATCGAATGCATCT 895
Query 833 TCAAGTTTTTCAGAAAAAGGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCAAGTTTTTCAGAAAAAGGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGG 955
Query 893 AGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATAACTAAAGATGCTAATG 952
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 AGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAATG 1015
Query 953 CTCTGGATAGAGATCTAGAAGCTAGTGGGTTCACAAGAAAGGAGCAGACTGACCTCGATA 1012
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTCTGGATAAAGATCTAGAAGCTAGTGGGTTCACAAGAAAGGAGCAGACTGACCTCGATA 1075
Query 1013 AATTTATTGAAGGTGGGATGGAGAAGAGTGAAGATTCTGATGAGGATGAGGAATCTGATG 1072
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AATTTATTGAAGGTGGGGTGGAGAAGAGTGAAGATTCTGATGAGGATGAGGAATCTGATG 1135
Query 1073 ATGAAGAGCAGACTTGTGAATCAAATGAAGAAGGAAACCTAAATGAATTGAAATCATTAC 1132
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 1136 ATGAAGAGCAGACTTGTGAATCAAACGAAGAAGGAAACCTAAATGAAATAAAATCATTAC 1195
Query 1133 AGTTGCAAGACGAGGAGCAAAAAAGTTCAGATGGTGTTGAGGCAGAAGTTGAGTTGGATA 1192
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGTTGCAAGACAAGGAGCAAAAAAGTTCAGATGGTGTTGAGGCAGAAGTTGAGTTGGATA 1255
Query 1193 ATACCGAGAACGGTGAAAGCAATG-AG--GA-G--GA-G--G-AAG-A--GA--A--AG- 1234
|||||||||||||||||||||||| || || | || | | ||| | || | ||
Sbjct 1256 ATACCGAGAACGGTGAAAGCAATGGAGATGAAGATGAAGTCGGAAGTAATGAGGAGGAGG 1315
Query 1235 ATG---------CAGAGCTGGAGAAAAATTTGGGCAAGGTAAGACGCAGAGCCATGACAG 1285
| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 AAGAGAAAGAGGCAGAGCTGGAGAAAAATTTGGGCAAGGTAAGACGCAGAGCCATGGCAG 1375
Query 1286 CAGCCAGGGGACGTAGAAAGTCACAATCTTCAAGAAACACATACAAGGACAAAGGACGCG 1345
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1376 CAGCCAGGGGACGTAGAAAGTCACAGTCTTCAAGAAACACATACAAGGACAAAGGACGCG 1435
Query 1346 GATCCCAAAACTCCAAGATCCACAACAACATGAGCGGCTTTTGA 1389
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1436 GATCCCAAAACTCCAAGATCCACAGCAACATGAGCGGCTTTTGA 1479
Score = 272 bits (147), Expect = 6e-72
Identities = 163/171 (95%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTTGACGTGAATGTGTTAAGATATCTATCCAAAGATGATTTTCGAGTTCTCACT 60
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 94 ATGAAGCTTGACGTGAATGTGTTGAGATATTTATCCAAAGATGATTTTCGAGTTCTCACT 153
Query 61 GCCGTTGAGATGGGAATGCGAAACCATGAGATTGTTCCTTCTGAGCTCGTTGAGCGCATT 120
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 154 GCTGTCGAGATGGGAATGCGAAACCATGAGATTGTTCCTTCTGAGCTTGTGGAGCGCATT 213
Query 121 GCTTCTCTAAAACATGGAGGCACATACAAGGTCCTGAAGAACTTGCTCAAG 171
|||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 214 GCTTGTCTAAAACATGGAGGCACCTACAAGGTCCTGAAGAACTTGCTCAAG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5