BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323696

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51380.1 | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-190...   494    3e-139


> AT3G51380.1 | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-19074426 
REVERSE LENGTH=312
Length=312

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 298/313 (95%), Gaps = 2/313 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCAATTCCAAACGATTGTTTGGCGTTGTACGAAGGAAACTTCTCCGACGATCTCAC  60
            |||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| 
Sbjct  1    ATGGCCAACTCCAAACGTTTGTTTGGTGTTGTAAGAAGGAAACTTCTCCGACGATCTCAA  60

Query  61   AGCAGAATCACTATCATTCGCTCATCAGCTCCAGAAACAACTCAAGAAGAGATTGCCGCA  120
            ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| 
Sbjct  61   AGCAGAATCACAATCATTCGCTCTTCAGCTCCAGAAACAACTCGAGAAGAGATTGCCGCC  120

Query  121  GTTAAAATCCAA-TCTTTCTTCAGAGGTCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA  179
            ||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  121  GTTAAAATCCAAGCCTTT-TTCAGAGGGCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA  179

Query  180  GAGTCTGGTGAAGTTACAGGCGGTGGCGAGAGGAGTGCTTGTGAGGAGACAAGCTCGAAT  239
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  180  GAGTCTGGTGAAGTTACAGGCGGTGGCTAGAGGAGTGCTTGTGAGGAGACAAGCACGAAT  239

Query  240  TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT  299

Query  300  TCTCTCTCATTAA  312
            |||||||||||||
Sbjct  300  TCTCTCTCATTAA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5