BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323696 Length=312 Score E Sequences producing significant alignments: (Bits) Value AT3G51380.1 | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-190... 494 3e-139 > AT3G51380.1 | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-19074426 REVERSE LENGTH=312 Length=312 Score = 494 bits (267), Expect = 3e-139 Identities = 298/313 (95%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 1 ATGGCCAATTCCAAACGATTGTTTGGCGTTGTACGAAGGAAACTTCTCCGACGATCTCAC 60 |||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| Sbjct 1 ATGGCCAACTCCAAACGTTTGTTTGGTGTTGTAAGAAGGAAACTTCTCCGACGATCTCAA 60 Query 61 AGCAGAATCACTATCATTCGCTCATCAGCTCCAGAAACAACTCAAGAAGAGATTGCCGCA 120 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 61 AGCAGAATCACAATCATTCGCTCTTCAGCTCCAGAAACAACTCGAGAAGAGATTGCCGCC 120 Query 121 GTTAAAATCCAA-TCTTTCTTCAGAGGTCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA 179 |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 121 GTTAAAATCCAAGCCTTT-TTCAGAGGGCACCTGGCAAGAAGAGCGTTTAAAGCATTGAA 179 Query 180 GAGTCTGGTGAAGTTACAGGCGGTGGCGAGAGGAGTGCTTGTGAGGAGACAAGCTCGAAT 239 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 180 GAGTCTGGTGAAGTTACAGGCGGTGGCTAGAGGAGTGCTTGTGAGGAGACAAGCACGAAT 239 Query 240 TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCT 299 Query 300 TCTCTCTCATTAA 312 ||||||||||||| Sbjct 300 TCTCTCTCATTAA 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14477111712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5