BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323737

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 | c...   887    0.0  


> AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 | 
chr3:19246991-19249095 REVERSE LENGTH=959
Length=959

 Score =  887 bits (480),  Expect = 0.0
 Identities = 539/565 (95%), Gaps = 14/565 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  ATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT  211

Query  61   GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGGCTACTAAACGAGAGACT  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  212  GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGCCTACTAAACGAGAGACT  271

Query  121  CGTAAAGAGAAGAAGGCTAAAAAAGACCCAAACAAACCGAAAAGAGCTCCTAGTGCCTTC  180
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  272  CGTAAAGAGAAGAAGGCTAAAAAGGACCCAAACAAACCAAAAAGAGCTCCTAGTGCCTTC  331

Query  181  TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  332  TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC  391

Query  241  GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA  451

Query  301  GCTCCATATGAAGAGAAAGCTGCAAGGAGGAAAGCTGAATATGAGAAGCAAATGGATGCA  360
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  452  GCTCCATATGAAGAGAAAGCTGCAAAAAGGAAAGCTGAATATGAGAAGCAAATGGATGCA  511

Query  361  TACAACAAAAACATGGAGGAAGGGAGTGATGAATCTGAGAAGTCTAGATCTGAGGTGAAT  420
            |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct  512  TACAACAAAAACTTGGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAAT  571

Query  421  GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTATA-Caagataagagaagaact  479
            ||||||||||||||||||||||||||||||||||||||| | |||  |  || | |||||
Sbjct  572  GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTA-AGCAA--T--GA-A-GAACT  624

Query  480  actagagaaggaagcggcaggtgatgatgaagaagaagaagaggatga---tgacgatga  536
            | ||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||
Sbjct  625  ATTAGAGAAGGAAGCGGCAGGTGATGATGAAGAAGAAGAAGAGGAAGAAGATGACGATGA  684

Query  537  tgatgacga-g-g-aagaagaCTAA  558
            ||||||||| | | |||||||||||
Sbjct  685  TGATGACGACGAGGAAGAAGACTAA  709



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5