BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323761
Length=3345
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52115.1 | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma respons... 2350 0.0
AT3G52120.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 2021 0.0
> AT3G52115.1 | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response
gene 1 | chr3:19326333-19328323 FORWARD LENGTH=1845
Length=1845
Score = 2350 bits (1272), Expect = 0.0
Identities = 1646/1815 (91%), Gaps = 72/1815 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGATGAAACTTTTGATGGTATCGAAGCCAAGTACATTTCTGGTCTCAGTACCATA 60
||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 1 ATGGGAGATGAAACTGTTGACGGTATCGAAGCCAAGTATATATCTGGTCTCAGTACTATA 60
Query 61 ATGGTTGCTACAATTCAAGAAGCCAAGGATCGAATTTCTCAGATCGAGTATATTTTTTGT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ATGGTTGCTACAATTCAAGAAGCCAAGGATAGAATTTCTCAGATCGAGTATATTTTTTGT 120
Query 121 AGCCAGTTATTCCCAAATTTTCAATCCAAATTTAAAGCTTTTGAAAAAGTTAATTCAGAG 180
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 121 AGCCAGTTATTTCCAAATTTTCAATCCAAATCCAAAGCTTTTGAAAAAGTTTATTCAGAA 180
Query 181 GCTCGTCTTGCTGCTTGTGATGCTTGGAAAGAGAGAGAGAAAAATTTGGTATCTCAGATT 240
||||||||||||||||||||| |||||||||| |||||||||| |||| || |||||||
Sbjct 181 GCTCGTCTTGCTGCTTGTGATACTTGGAAAGATAGAGAGAAAAGTTTGTTAGATCAGATT 240
Query 241 GAGGAGCTTAAGTTAGAGAATCAACAGATTAAGTCTGAGAATGTGGAATTGATCAAGAAT 300
|| ||||||||| |||||||| | || | || || | || | || || ||
Sbjct 241 GAAGAGCTTAAGGTAGAGAAT---C-----AA--C--AG-AT-T--AA--G-TC-AG-AT 279
Query 301 AAGGAGAAGCTAGCTGAACAACTTGATAGAACTGCTTCTATGCCTCTTAGACTGACGAGT 360
||||||||| |||||||| |||||| || |||||||||||||||||||||| ||||||||
Sbjct 280 AAGGAGAAGTTAGCTGAAGAACTTGGTAAAACTGCTTCTATGCCTCTTAGATTGACGAGT 339
Query 361 CTACAAGACTACATTGCTCATTTGAAAAAGAAGCTCAAGAGTAGATCTAAGATGGTTAGT 420
||||||| |||||| | |||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 340 CTACAAGGCTACATCGATCATTTGAAAAAGAAGATGAAGAGTAGATCTAAGATGGTTGGT 399
Query 421 GATGCAAGAGAGTTGTATTATAGGTTAGTTCAGTTGTTACAGGTTAAGGGTTCGGATGAG 480
||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 400 GATGCAAGAGATTTGTATTATAGGTTAGTTGAGTTGTTGCAGGTTAAGGGTTTGGATGAG 459
Query 481 CTTAGCGAAGATGGGATTAATATGATTCTTTCGGAAGTGAAGAGCCTTAAGGTGAAGCCT 540
||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 460 CTTAGCGAAGATGGGATAAATATGATTGTTTCGGAAGTGAAGAGCCTTAAGATGAAGACT 519
Query 541 GAATTTCTTCAGGAGGAACTTTCAAAGAAGACATTGGTAACGGAGAATCTGCTGAAGAAA 600
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 520 GAATTTCTTCAGGAGGAACTCTCAAAGAAGACATTGGTGACGGAGAATCTGCTGAAGAAA 579
Query 601 CTGGAGTATTTGTCTACAGAAGCTGCGGATGGTGAAAGGAAGTTGAGCAGCGTTGAAGAA 660
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 580 CTGGAGTACTTGTCTACAGAAGCTGCAGATGGTGAAAGGAAGTTGAGCAGCGTTGAAGAA 639
Query 661 GAGAAACAAAAATTGAAGACTAGGTTGCAGGTTTTTGAGGAGAATGTCGGTAGACTTGAA 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GAGAAACAAAGATTGAAGACTAGGTTGCAGGTTTTTGAGGAGAATGTCGGTAGACTTGAA 699
Query 721 GAGATGCTCAGGCAGAAGAACGATGAGCTTGAGGAAGGACAGACGGCTCTTGAGGTTTTG 780
||||| || ||||| |||| ||||||| ||||||||||| |||| |||||||||||||||
Sbjct 700 GAGATACTTAGGCAAAAGACCGATGAGGTTGAGGAAGGAAAGACAGCTCTTGAGGTTTTG 759
Query 781 CAGGGTAAACTCAACTTGACAGAGAGGGAAATGTTGGAGTGTAAACAAAAGATTGCAGAT 840
|||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 760 CAGGGTAAACTCAAATTGACCGAGAGGGAAATGTTGAATTGTAAACAAAAGATTGCAGAT 819
Query 841 TATGAGAAAGAAAAGACAGTGGTTATGGGAAAAGCAAAGGACGATATGCCTATGATGCAG 900
|||||||||||||||||||||||||||||||||||||||| | | || ||||||
Sbjct 820 CATGAGAAAGAAAAGACAGTGGTTATGGGAAAAGCAAAGGA---T--G---AT-ATGCAG 870
Query 901 GGCAGACACGGAAGCTACTTGGCTGACTTAGAAGCTTTATGTTGCCAGAGTGAAGAGAAA 960
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 871 GGCAGACACGGAAGCTACTTGGCTGACTTAGAAGCTTTACGTTGCCAGAGTGAAGAGAAA 930
Query 961 TCATTTGAGTTAGCTATGGAGATAAAGAAAAGA-AAAGAACTCTATAGTACTTGCAAAAA 1019
||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 931 TCATTTGAGTTAGCTATGGAGATAAAGAAAA-ATAAAGAACTCTCTCGTACTTGCAAAAA 989
Query 1020 GCTG-AAGTCCCAATATAATTTTCTCTGCAAAAGGTTTGGTTTTACTCCTGACAGTGTTC 1078
| || ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 990 G-TGGAAGTCCCAACATACTTTTCTCTGCAAAAGGTTTAATTTTACTCCTGACAGTGTTC 1048
Query 1079 TTCACCAAAGCAGCCTTGAGGAC-----TACC----T----C-G-A-GA-AAC-CAGCAA 1120
|||||||||||||||||||||| || | | | | || || ||||||
Sbjct 1049 TTCACCAAAGCAGCCTTGAGGATGAGAATAAAGAAATTGGTCAGCATGAGAAATCAGCAA 1108
Query 1121 TCTCGAGTTTTCTTGAAAAGAAACACTCAGAAACTGCTGAAGGAGCAGACAAAGTGAGAA 1180
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TCTCGAGTTATCTTGAAAGGAAACACTCAGAAACTGCTGAAGGAGCAGACAAAGTGAGAA 1168
Query 1181 TTGGTGA-TGGCTCGAGTGGCAACAACTGCGAGAAAGAGAGGATAATCAAAACGGTGCAG 1239
||||| | |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1169 TTGGT-ACTGGCTCGAGTGGCAACAACTATGAGAAAGAGAGTATAATCAAAACAGTGCAG 1227
Query 1240 ACACCTATCACTTCCATCTCACCAATTGTGCGATTACCTGGTGTCAGAAGTGACCCCTCT 1299
|||||||||||||||||||||||||||||||| | |||||||| | || |
Sbjct 1228 ACACCTATCACTTCCATCTCACCAATTGTGCGGTCACCTGGTG-C-----TG-C------ 1274
Query 1300 GCTGCAAAATCTCCACAGCTGAGTGGATCAAAGCGTCCAGCTTCCATTTGGAGAGACACA 1359
|||| |||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1275 -----AAAACCTCCACAGCTAAGCGGATTAAAGCGTCCAGCTTCCATTTGGAGAGACACA 1329
Query 1360 AGGTCTCGCCAATCTCCTGGAGGCCATGATCCTCATGATGATTTTCTAGATACTCCCATT 1419
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1330 AGATCTCGTCAATCTCCTGGAGGACATGATCCTCATGATGATTTTCTAGATACTCCCATT 1389
Query 1420 GAGAATGTCAAAAGGGTCGCTGGGGAAGAAAAACATGTTCATAATGTTGCTAAGAAAGAT 1479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1390 GAGAATGTCAAAAGGGTCGCTGGGGAAGAAAAACATGTTCATGATGTTGCTAAGAAAGAT 1449
Query 1480 GATTCAGACGATGAGACACAGGACATGAATCCTAAACCGAGTCCATCAAGGCAGCGAATT 1539
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1450 GATTCAGACGACGAGACACAGGACATGAATCCTAAACCGAGTCCATCACGACAGCGAATT 1509
Query 1540 CAAGTTGTAGAAACGAGTaaaaaaaGTTTCAAGCATGTGGAGTCAGTGAGGAAAAAAGCT 1599
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1510 CAAATTGCAGAAACGAGTAAAAAGAGTTTCAAGCATGTGGAGTCAGTGAGGAAAAAAGCC 1569
Query 1600 GAGAGGGAGAATTTGAAAGGGATAGAGTGTAAGCAGTGCAAGAAATTCTATGATGCTGTA 1659
|||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct 1570 GAGAGGGAGAATTTGAAAGGTATAGAATGTAAACAATGCAAGAAATTCTATGATGCTGTT 1629
Query 1660 CATCCTGAGAATGAAGGAAATGGTAACAAAAGCTTGAGATGTGAGCATCATGAAGGTGTG 1719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1630 CATCCTGAGAATGAAGGAAATGGTAACAAAAGCTTGAGATGTGAACATCATGAAGGTGTG 1689
Query 1720 TCGAGGCATCGTTATAGATACGCTCCTCCAATGACTCCTGAAGGATTTTGGAACATCGGG 1779
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1690 TCGAGGCATCGTTACAGATACGCTCCTCCAATGACTCCTGAAGGGTTTTGGAACATCGGG 1749
Query 1780 TTTGAATCCGAAATG 1794
|||||||||||||||
Sbjct 1750 TTTGAATCCGAAATG 1764
> AT3G52120.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch domain-containing
protein | chr3:19328711-19331970 FORWARD LENGTH=1693
Length=1693
Score = 2021 bits (1094), Expect = 0.0
Identities = 1210/1265 (96%), Gaps = 11/1265 (1%)
Strand=Plus/Plus
Query 1840 CTGATTTACGATTCAATCC-CTCCGATCGTTGGCCTCCTGTTTCCGTTTTGTTCGATATC 1898
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1 CTGA-TTACGATTCAATCCTCTCCGATCGTTGGCCTCCTGTTTCCGTTTTACTCGACATC 59
Query 1899 GTTCCGACGACTTTTCACCGAGCTTATCTGTTCAACAGTGACTACAATTCAACTATTGCA 1958
||||||||||||||| ||| | ||| | | |||||||| ||||||||||||||||
Sbjct 60 GTTCCGACGACTTTTGACC-TG-GAATC-G-AC-GCAGTGACTTCAATTCAACTATTGCA 114
Query 1959 CTTGGTTTGTTCGGTAATGGACAACAAAGGAGCACCTCCTAGCATCTTTGTGAATGATGG 2018
||||||||||| || ||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 115 CTTGGTTTGTT-GGCAATGG---ACAAAGGAGCACCTCCTAGTATTTTTGTGAATGATGG 170
Query 2019 GTCATTCATGGAAAGATTCAGACAGCTTCAACAGGAGAAAGATAAAGACAAGGACAAGGT 2078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 171 GTCATTCATGGAAAGATTCAGACAGCTTCAACAGGAGAAAGATAAAGACAAGGATAAGGT 230
Query 2079 TGTCCAAGTTGAGGATTCTAAGCCGGTGAAGATTATATCAAATCCCAAACCTTCTGCTAA 2138
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 TGTCCAAGTTGAGGATTCTAAGCCGGTGAAGATTATATCAAATCCCAAACCTGCTGCTAA 290
Query 2139 TAAAATTTCCATTGGATTAAAGACCAATGATGCCCAGAAGAAAGGTGGTAAGCTTGCTTT 2198
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 291 TAAAATTTCCATTGGATTAAAGCCCAATGATGCCCAGAAGAAAGGTGGTAAGCTTGCTTT 350
Query 2199 CAGCTTGAAGCAAAAGTCTAAGCTTCTTGCACCTCCTGTGAAGCTTGGTACTGAAGAAGA 2258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 351 CAGCTTGAAGCAAAAGTCTAAGCTTCTTGCACCTCCTGTGAAGCTTGGTACAGAAGAAGA 410
Query 2259 TGAGGATGAGGAGGATGCTAAAAATGATCAAGGTTTTGGATTTGTAAAGCGTCAAAAGTT 2318
||||||||| ||||||| |||| |||| ||||| ||||||| |||||||||||||||||
Sbjct 411 TGAGGATGATGAGGATGTTAAACATGAACAAGGCTTTGGATCCGTAAAGCGTCAAAAGTT 470
Query 2319 AGAGCAGAGAGACACGCCTGTAAAGTCAGCAAGAGTATCTGATGTTGCACCACCTCCGCC 2378
||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 471 AGAGCAGAGAGACACACCTGTAAAGTCAGCAAAAGTATCGGATGTTGCACCACCTCCGCC 530
Query 2379 CAGTGATCCTACTGTGAAGAAAGTTGCTGATAAACTAGCAAGTTTTGTTGCTAAGCATGG 2438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CAGTGATCCTACTGTGAAGAAAGTTGCTGATAAACTAGCAAGTTTTGTTGCTAAGCATGG 590
Query 2439 AAGGCCATTTGAGCACATTACACGGCAAAAGAATCCTGGGGATACACCATTTAAATTTCT 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AAGGCCATTTGAGCACATTACACGGCAAAAGAATCCTGGGGATACACCATTTAAATTTCT 650
Query 2499 TTTTGACGAGAACTGTGCGGACTACAAGTACTATGTATTCAAGCTGTCTGAAGAGGAAAA 2558
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 651 TTTTGACGAGAACTGTGCGGACTACAAGTACTATGTATTCAGGCTGGCTGAAGAGGAAAA 710
Query 2559 ATCAATTTCACAAACCAATGATTCTGGTGTACTTCACAGTGGTGATGCAGGCCCGCGAAC 2618
|| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 ATTAATTTCACAAACCAAGGATTCTGGTGTACTTCACAGTGGTGATGCAGGCTCGCGAAC 770
Query 2619 GTCCACAGCAGCAATCACTTTGCAAAAGCCAGCTTATCAACAAACAGGATATCAGATCCC 2678
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTCCACAGCAGCAATCCCTTTGCAAAAGCCAGCTTATCAACAAACAGGATATCAGATCCC 830
Query 2679 TGCTTCAGCTCTCTATGATGCTCCTGAGGAACCTGGAGCTTCTTCTAGATCTGCTCAGGC 2738
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 831 TGCCTCAGCTCTCTATGATACTCCTGTGGAACCTGGAGCTTCTTCTAGATCTGCTCAGGC 890
Query 2739 ATCAATTACAAGACCCAGCAACAGTGACTCCTTTAGTGGGCCGAGGGGTGCAGACCCTAT 2798
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 891 ATCAATTACAAGACCCAGCGACAGTGACTCCTTTAGTGGGCCGAGGGGTGCAGACCCTCT 950
Query 2799 ATCAATGATGGAGTTTTACATGAAGAAGGCTGCCCAAGAAGAGAAAATGAGACGTCCGAG 2858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 951 ATCAATGATGGAGTTTTACATGAAGAAGGCTGCCCAAGAAGAGAAAATGAGACGTCCTAG 1010
Query 2859 GCAGTCAAAAGATGAAATGCCTCCACCAGCTTCCCTTCAAGGCCCATCTGAAACTTCGTC 2918
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 GCAGTCAAAAGACGAAATGCCTCCACCAGCTTCCCTTCAAGGCCCATCTGAAACTTCCTC 1070
Query 2919 CACAGACCCTGGAAAGAGAGGTCATCACATGGGTGATTATATCCCACTTGAGGAGCTAGA 2978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CACAGACCCTGGAAAGAGAGGTCATCACATGGGTGATTATATCCCACTTGAGGAGCTAGA 1130
Query 2979 TAAGTTCCTTTCAAAGTGCAATGATGCAGCTGCACAAAAAGCCACAAAGGAGGCTGCTGA 3038
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1131 TAAGTTCCTTTCAAAGTGCAATGACGCAGCTGCACAAAAAGCCACAAAGGAGGCTGCTGA 1190
Query 3039 GAAGGCTAAGATCCAAGCAGATAATGTTGGACATAAACTCTTGTCAAAAATGGGTTGGAA 3098
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GAAAGCGAAGATCCAAGCAGATAATGTTGGACATAAACTCTTGTCAAAAATGGGTTGGAA 1250
Query 3099 AGAAG 3103
|||||
Sbjct 1251 AGAAG 1255
Score = 379 bits (205), Expect = 8e-104
Identities = 207/208 (99%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 3138 AGGTGAAGGTATAGGAAGCTCCAGAAAGGGTATGGCAGACCCTATAATGGCAGGCGATGT 3197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGGTGAAGGTATAGGAAGCTCCAGAAAGGGTATGGCAGACCCTATAATGGCAGGCGATGT 1313
Query 3198 AAAGACAAACAACTTGGGAGTTGGTGCTTCCGCTCCAGGAGAAGTCAAGCCTGAGGATGA 3257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AAAGACAAACAACTTGGGAGTTGGTGCTTCCGCTCCAGGAGAAGTCAAGCCTGAGGATGA 1373
Query 3258 CATATACGAGCAGTACAAGAAGCGGATGATGCTGGGTTACAAACACAGACCCAATCCACT 3317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TATATACGAGCAGTACAAGAAGCGGATGATGCTGGGTTACAAACACAGACCCAATCCACT 1433
Query 3318 GGGAAATCCCAGGAAGGCGTATTACTAA 3345
||||||||||||||||||||||||||||
Sbjct 1434 GGGAAATCCCAGGAAGGCGTATTACTAA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166453916874
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5