BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323774
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52240.1 | Symbols: | unknown protein; Has 220 Blast hits t... 2966 0.0
> AT3G52240.1 | Symbols: | unknown protein; Has 220 Blast hits
to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa
- 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes
- 53 (source: NCBI BLink). | chr3:19372714-19375880
REVERSE LENGTH=2312
Length=2312
Score = 2966 bits (1606), Expect = 0.0
Identities = 1920/2068 (93%), Gaps = 36/2068 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATCAAGACAAGTTAGATCATCATCGGTGTGTTGATTCAGAGGCACAAGATCCT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 82 ATGGCGAATCAAGACAAGTTAGATCATCATCGGTGTATTGATTCAGAGGCACAAGATCCT 141
Query 61 ACTTCAATGACTATTGAGTTTCTGCGTGCACGTTTACTT-GCTGAAAGAGCTGTTTCCAA 119
|||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 142 ACTTCAGTGACTATTGAGTTTCTTCGTGCACGTTTA-TTAGCTGAAAGAGCTGTTTCCAA 200
Query 120 GAGTGCTAGAGCAAAGCTTGATGGCCTCGCTGATAAAGTAGCTGAGTTGGAGGAACAGCT 179
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 201 GAGTGCTAGAGCAAAGCTTGATGGTCTCGCTGATAAAGTAGCTGAGTTAGAGGAACAGCT 260
Query 180 CAAGATTGTGTCTTTACAGAGAAAGAAAGCAGAACAGGCAACTGCTGATGTTCTTGCGAT 239
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 261 CAAGATTGTATCTTTACAGAGGAAGAAGGCTGAACAGGCAACTGCTGATGTTCTTGCGAT 320
Query 240 CCTAGAGGAAAATGGATATACTGATGATGTCTCTGATGATTATGATTCAAACTCTGATCA 299
| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 321 CTTAGAGGAAAATGGGTATA---ATGATGTGTCTGATGATTATGATTCAAACTCTGATCA 377
Query 300 TGAATGCTACTCTCAGACAAATTCAGCT-TTAGGGAAAAGTTTATCCTGGAAAGGTCGTA 358
||||||||||||||||| || |||| | ||||| |||||||| |||||||||||||| |
Sbjct 378 TGAATGCTACTCTCAGAGTAACTCAG-TGTTAGGCAAAAGTTTGTCCTGGAAAGGTCGCA 436
Query 359 GGACGGAACCGGGTTCTTCTGACAAGATCAAGGAAAACCGGAATAGGAGACATCATAGAG 418
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 437 GGAGGGAACCAGGTTCTTCTGACAAGATCAAGGAAAACCGGAATAGGAGACATCACAGAG 496
Query 419 GTTTCGAGTGTGCTTATTTTTCCTCACCGAGACACCGCCAAGGAAGATCTTGTCGCCAAA 478
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 497 GTTTCGAGTGTGCTTATTTTTCCTCACCGAGACATCGTCAAGGAAGATCTTGTCGGCAAA 556
Query 479 TTAGACGTGGTGAATCAAGAAATGTATCTGAGGATTACAAGAGAGATGGAAATCCGGTTG 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TTAGACGTGGTGAAGCAAGAAATGTATCTGAGGATTACAAGAGAGATGGAAATCCGGTTG 616
Query 539 ATTTTCAAGAAAATGGAGTTCGCACTGAAATGCTTCCTCAAGCGAATGAAGATGCATCCA 598
| ||||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
Sbjct 617 AATTTCAAGAAAATGGAGTTCGCACTGAAATGCTTCCTCAAAAGAATGATCAAGTATCTA 676
Query 599 GAACCGTGGTGGATGTTGCTGTTGTGAAGGGAGACGAAAGTTTGAACAAGTTGTCAAATT 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 677 GAACCGTGGTGGATGTTGCTGTTGTGAAGGGAGACGATAGTTTGAACAAGTTGTCAAATT 736
Query 659 CAAATGGTTTAGAGAAAGAAAACAGTACGGATATCAACTTGGAGAGAGCATTAGAAAACC 718
|||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 737 CAAATGGTTTAGAGAAGGGAAACAGTACGGACATCAACTTGGAGAGAGCGTTAGAAAACC 796
Query 719 GTGCTCAAGTTATCGGATCTTTTGAAGATATGGAAGAGACTCAAAGGGAATGGGAGAAAA 778
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 797 GTGCTCAAGTTATCGGATCTTTTGAAGAAATGGAAGAGACTCAAAGGGAATGGGAGAAAA 856
Query 779 AGTTCAGAGAAAATAAATCATCTGCCCTGGATTTATGTGATGTAGGAAACCATTCTGATG 838
| |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 857 ATTTCAGAGAGAATAAATCATCTGCCCTGGATTTATGTGACGTTGGAAACCATTCAGATG 916
Query 839 TGACGGATGAAAGTAACGGGGAAAAAGCCCAATCTCCGCTTCAAGGTTCCACAGTAGTCC 898
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 917 TGACGGATGAAAGTAACGGAGAAAAAGCTCAATCTCCACTTCAAGGTTCTACAGTAGTCC 976
Query 899 CTTCACTCCGTGATACAAGGTCTATAGCTAATGAAGTTGACTTTAGGGAATCGTTTGAAA 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 977 CTTCACTCCGTGATACAAGGTCTATAGCTAATGAAGTTGACTTTAGAGAATCGTTTGAAA 1036
Query 959 CTTTGTCACATGGTTCACCTGATAATTCAGTAACGTCACCTGATAAGTGCTGCAAAAGTT 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1037 CTTTGTCGCATGGTTCACCTGATAATTCAGTAACGTCACCTGATAAGTGCTGCAATAGTT 1096
Query 1019 GTGGTTCCAGATCTCTGGAACAAGATGCTTCTTCTTCTAGAGACAAAGGAAAACATGTTT 1078
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 1097 GTGGTTCCAGATCTGTGGAACAAGATGCTTATTCTTCTCGAGACAAAGGAAAACATATTT 1156
Query 1079 CTGAGAGCCCTAAAAGTGAGTATTCCCATCCACAGAGCTGTAAAGGTATCAATGAGCACT 1138
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 1157 CTGAGAGCCCTACAAGTGAGTATTCCCAACCACAGAGCAGTAAAGGTATCAATGAGCATT 1216
Query 1139 CGTCATCAACTATTCGGTCACCTCTTGTAACGCAACCAACCTCTAGAGGTGGTTCCTTTG 1198
| ||||||||||||||||| |||| |||||||||||||| ||| |||||||||| |||||
Sbjct 1217 CTTCATCAACTATTCGGTCGCCTCCTGTAACGCAACCAAACTCGAGAGGTGGTTTCTTTG 1276
Query 1199 ACAGTACTACCACTGCCATCCA-GAAAGTAGATTATCCATTAGTTCCACTGAAAGAGGGG 1257
||||||||||||| |||| || | |||||||| ||||||||||| || ||||||| | |
Sbjct 1277 GCAGTACTACCACTACCATTCATG-AAGTAGATGATCCATTAGTTTCAGTGAAAGATGTG 1335
Query 1258 AAGTCTGATACTTGTGAAACTGTACTCACCGCGCTAAAGCAAGCGAAGTTGTCTCTGCAA 1317
||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1336 AAGCCTGATACTTGTGAAACTGTACTGACCGCACTAAAGCAAGCGAAGCTGTCTCTGCAA 1395
Query 1318 GAGAAAGTCAATAGCCTACATATCAGAAAACCTGATTGTCATTCTGAAAGCTCGTATCCT 1377
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1396 GAGAAAGTCAATAGCCTACATATCAGAAACCCGGATTGTCATTCTGAAAGCTCATATCCT 1455
Query 1378 TCAACACCAGGTTCATATATGAACACGTACGCATTACCGATAGAACCAGCATTTAGTACT 1437
|||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||
Sbjct 1456 TCAACACCAGGTTCATATATGAACACATATGCACTACCGATGGAACCAGCATTTAGTACT 1515
Query 1438 AAACCATCTCTCCCTGCTTCCAGCATCGAGTCCATGGTAGAGTTTCCTGTTGGC--TG-T 1494
||||||||||||||||||||||| ||| |||||||||||||||||| ||| | || |
Sbjct 1516 AAACCATCTCTCCCTGCTTCCAGTGTCGGGTCCATGGTAGAGTTTCCAGTTATCTGTGCT 1575
Query 1495 GCTGGACTTTTCCGTGTACCCACTGATTTTTCATCTGATGCTTCAAATAGGAACAGTTTT 1554
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1576 GCTGGACTTTTCCGTGTCCCCACCGATTTTACATCTGATGCTTCAAATAGGAACACTTTT 1635
Query 1555 CTAGCTTCGAGTTCTCAGAACGCTATGGTTACCCATATGCCTGAGCGAGACATCCCCCTA 1614
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1636 CTAGCTTCGAGTTCTCAGAACGCCATGGTTACCCATATGCCTGAGCGAGACGTCCCCCTA 1695
Query 1615 GTACCTGGAGATCAGCTTTTCACCAAAACAGCCTCAAACAACCTCCTAAATACTGGCTTC 1674
|||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||
Sbjct 1696 GTACCTGGAGATCAGCTTTTCAGCAGAACAGCCACAAACAATCTCCTAAATACTGGCTTC 1755
Query 1675 CAAAGCCAACTAGAAACCAGTCCTCCTTTGTCAGTGGATGACCGACTTTTGACCACCCCA 1734
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1756 CAAAGCCAACTAGAAACCAGTCCTCCTTTGTCAGTGGATGACCGACTTTCGACCACCCCA 1815
Query 1735 TACATCGGTGGACCAAAACTATGGTCCAGCTTCAGGGCAGATGGTCCACCGATGATTGAT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1816 TACATCGGTGGACCAAAACTATGGTCCAGCTTCAGGGCAGATGGTCCACCGATGGTTGAT 1875
Query 1795 GTTCCAGGATTCAGACTTAATAAAGGCACACCAAGTGTTTCAGGCAGTGGAATCTCTGGT 1854
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 1876 GTTCCAGGATTCAGACTTAATAAAGGCATACCAAGAGTTTCAGGCAGTGCAATCTCTGGT 1935
Query 1855 GGAACATCTGGTTTTGAAGGTAACCAAGTATCCTCAACTAGCTTCAACTTAGATAGACGA 1914
|||||||||||||||||||||||||||||||| |||| | | | | | ||
Sbjct 1936 GGAACATCTGGTTTTGAAGGTAACCAAGTATCGTCAA---G-T--A-C--A--TA----- 1979
Query 1915 GCAAGTACATCTACCCCTGTGACACCTACTCGAAGCTTGTATCCCGATTCAGTTCTAAGT 1974
|| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1980 -----TA-AT--ACCCCTGTGACACCTACTCGAAGCTTGTATCCTGATTCAGTTCTAAGC 2031
Query 1975 AGTAGAGAATTGTATTCAACTCCTTATTACACACGCCCAATTGGGCTGCCTCCTACTAGT 2034
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 2032 AGTAGAGAATTGTATTCGACTCCTTATTACACACGCCCGTTTGGGCTGTCTCCTACTAGT 2091
Query 2035 GGTTCAGATGATGGCTTATTTAGGCGAG 2062
||||||||||||||||||||||||||||
Sbjct 2092 GGTTCAGATGATGGCTTATTTAGGCGAG 2119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102459312345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5