BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323817
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52748.1 | Symbols: | other RNA | chr3:19548972-19549589 FO... 318 1e-86
> AT3G52748.1 | Symbols: | other RNA | chr3:19548972-19549589
FORWARD LENGTH=436
Length=436
Score = 318 bits (172), Expect = 1e-86
Identities = 208/225 (92%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAAACAACCACACAAGCTTTTCTTCTTCTATGTTTGCTTCATATATTTCTATGT 60
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 15 ATGAAGAAAACAACAAGACAAGCTTTTCTTCTCCTATGTTTGCTTCATATATTTCTATGT 74
Query 61 CTATCCTTTCAGGCTCGTGTCCACCAAGGTAAACCTGAGATATGCGTAAGACCCTCCCCA 120
|| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTCTCTTTTCATGTTCGTGTCCACCAAGGTAAACCTGAGATATGCGTAAGACCCTCCCCA 134
Query 121 CCATGTGGAGATTCTCCCAAGGGAGG---TGAAGATACGCCGGCACGTGATTATAAAAAG 177
||||||||||||||||| |||||||| |||||||||||||| || | | |||||||||
Sbjct 135 CCATGTGGAGATTCTCCAAAGGGAGGAGGTGAAGATACGCCGGGACATAACTATAAAAAG 194
Query 178 CCTTGTAAACCCATTCCAAGACCTCCTCCTCCTCGAGATTGCTAG 222
||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 195 CCTTGCAAACCCATTCCAAGACCACCTCCTCCTCGAGATTGCTAG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5