BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323833

Length=1005
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77650.1 | Symbols:  | F-box associated ubiquitination effec...   318    6e-86


> AT1G77650.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:29181110-29182261 FORWARD LENGTH=1152
Length=1152

 Score =  318 bits (172),  Expect = 6e-86
 Identities = 353/435 (81%), Gaps = 34/435 (8%)
 Strand=Plus/Plus

Query  597   GATTGATGACTCAG-TAGCCTTTTC-AGCTTTCAGAGGAGATAGGCTTTCTTTG-TT--T  651
             ||||| ||| |||| || || |||| || |||||||| |||||||||||||||| ||  |
Sbjct  726   GATTGCTGATTCAGTTATCC-TTTCAAG-TTTCAGAGTAGATAGGCTTTCTTTGTTTCGT  783

Query  652   CATCAACTCTTTGGAGACGAAACAA-GGGAGATTGAGGTGTGGGTCACGAACAAGGTGAC  710
             || |||| | ||| |||  ||| ||   ||||| ||||| |||||||| |||||||||||
Sbjct  784   CAACAACGCCTTGAAGA-TAAAAAATATGAGATGGAGGTTTGGGTCACAAACAAGGTGAC  842

Query  711   TGATGGGGTTGTCACATTGAGTAAGTATTTTAATGTGGCT---CGTCCTGATCTCCCTAT  767
             ||||| ||||||| ||| || |||||||||||||||| ||   |  ||||||||||| ||
Sbjct  843   TGATGAGGTTGTCTCATGGACTAAGTATTTTAATGTGACTCACCACCCTGATCTCCCCAT  902

Query  768   CTTAAAT-CC--TCAT-TT----T--ATGCGTGTTCCGACTTTCTTCATCCACAAGACCA  817
             ||||||| ||  || | ||    |  ||||||||||| || |||||||||||| ||||||
Sbjct  903   CTTAAATCCCTATC-TCTTCACATACATGCGTGTTCCTACATTCTTCATCCACGAGACCA  961

Query  818   ATTCTATCATGTTATGGTGCGATAAAGTTG-TAGGAGAGGGTTATGCTTGTACCAGCTTG  876
             ||||||||||||||||||||||||||| || | ||| |||||| ||||||||| ||||| 
Sbjct  962   ATTCTATCATGTTATGGTGCGATAAAGCTGCT-GGAAAGGGTTTTGCTTGTACGAGCTTT  1020

Query  877   TACGAAATTGGT---CGGGGTGAGATCAAAAAACAAGTTGAGACAGGACAACCTTTTAGC  933
             ||||||||||||   | ||||||| ||||| | ||| |||||||| || ||| |||||| 
Sbjct  1021  TACGAAATTGGTGATCAGGGTGAGGTCAAACATCAACTTGAGACAAGAAAACGTTTTAGA  1080

Query  934   GGTGAA-GATGAACGTAAC-CATTTTGTTATA-AGCTTTGTTTACGTTCCAAGTCTGGTT  990
             | | || | |||||||||| | || |||| |  |||| ||||||||||||||||||||||
Sbjct  1081  GCT-AACGGTGAACGTAACTC-TTGTGTT-TCCAGCTGTGTTTACGTTCCAAGTCTGGTT  1137

Query  991   CCGGTTCCAGAATAA  1005
             ||  ||||||| |||
Sbjct  1138  CCCATTCCAGAGTAA  1152



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49229464060


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5