BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323835
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor ... 1808 0.0
AT3G52905.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 863 0.0
> AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor
4 | chr3:19616021-19618449 REVERSE LENGTH=1480
Length=1480
Score = 1808 bits (979), Expect = 0.0
Identities = 1087/1135 (96%), Gaps = 24/1135 (2%)
Strand=Plus/Plus
Query 1 ATGGACTTGCAACTGAAACAATGGAGAAGTCAGCAGCAGAATGAGTCAGAAGAACAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGACTTGCAACTGAAACAATGGAGAAGTCAGCAGCAGAATGAGTCAGAAGAACAAGGC 241
Query 61 TCTGCTGCAACTAAGATATCAAACTTTTTCTTTGATCAGATTCAGTCCCAAACTGCAACT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 242 TCTGCTGCAACTAAGATATCAAACTTTTTCTTTGATCAGATTCAGTCCCAAACTGCTACT 301
Query 121 TCTGCTGCTGCGGctcctcttcctctctttgtccctgaacccacttcttcctcttctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTGCTGCTGCGGCTCCTCTTCCTCTCTTTGTCCCTGAACCCACTTCTTCCTCTTCTTTC 361
Query 181 tcatgcttctctcctgactcttctaa--ct-cttcttcttcCAGGTTCCTCAAGATGGGA 237
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 362 TCTTGCTTCTCTCCTGACTCTTCTAATTCTTCTTCTTCTTCCAGGTTCCTCAAGATGGGA 421
Query 238 AACTTTTTCAGCTGGGCACAGTGGCAAGAACTTGAGCTACAAGCACTGATCTATAGATAC 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AACTTCTTCAGCTGGGCACAGTGGCAAGAACTTGAGCTACAAGCACTGATCTATAGATAC 481
Query 298 ATGTTGGCTGGTGCTTCTGTTCCTCAAGAGCTTCTCTTACCTATCAAGAAAAGTCTCATC 357
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 482 ATGTTGGCTGGTGCTTCTGTTCCTCAAGAGCTTCTCTTACCTATTAAGAAAAGTCTCCTC 541
Query 358 CATCAATCTCCTATGCATTTCCTTCACCATCCTCTTCAACATAGTTTTCCTCATCACCAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CATCAATCTCCTATGCATTTCCTTCACCATCCTCTTCAACATAGTTTTCCTCATCACCAA 601
Query 418 CCTTCTTGGTACTGGGGAAGAGGAGCAATGGATCCTGAGCCAGGGAGGTGCAAGAGAACA 477
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 602 CCTTCTTGGTATTGGGGAAGAGGAGCAATGGATCCTGAGCCAGGGAGGTGTAAGAGAACT 661
Query 478 GACGGCAAGAAATGGAGATGTTCAAGGGATGTTGTAGCCGGCCACAAGTATTGTGACCGC 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 662 GACGGCAAGAAATGGAGATGTTCAAGGGATGTTGTAGCGGGCCACAAGTATTGTGACCGC 721
Query 538 CACATCCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCACCACC 597
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 722 CACATTCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCACCATC 781
Query 598 ACAACAACAGCCACAACAACCGCATCTTCTTTTGTCTTAGGAGAGGAGCTTGGTCATGGA 657
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 ACAACGACAGCCACAACAACCGCATCTTCTTTTGTCTTAGGTGAGGAGCTTGGTCATGGA 841
Query 658 CCAAACAACA-CC--T-CT--------GGTTCATCTCAACATCTCCACCTTAGTCATCAA 705
|||||||||| || | || ||||||||||||| |||||||||||||||||||
Sbjct 842 CCAAACAACAACCACTTCTTCTCCTCTGGTTCATCTCAACCTCTCCACCTTAGTCATCAA 901
Query 706 CAAAGTTGTTCTTCAGAGATGAAACAAGAAAGCAACAACAACAAGAGGCCATATGAAGCT 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CAAAGTTGTTCTTCAGAGATGAAACAAGAAAGCAACAACAACAAGAGGCCATATGAAGCT 961
Query 766 AACAATGGATTCAACAATGGAAGATCAGACGATGGTCACATCTTGAGGCATTTCTTTGAC 825
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AACAGTGGATTCAGCAATGGAAGATCAGACGATGGTCACATCTTGAGGCATTTCTTTGAC 1021
Query 826 GATTGGCCACGATCATCGGACTCTACTTCCAGTCCAATGAGCTCATCCACTTGTCATCTT 885
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1022 GATTGGCCACGATCATCAGACTCTACCTCCAGTCCAATGAGCTCATCCACTTGTCATCTT 1081
Query 886 TCAATCTCCATGCCCGGTAACCGTAACGCTTCCTCAGATGTTTCTCTAAAACTTTCCACA 945
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1082 TCAATCTCCATGCCCGGTAAC---AACACGTCCTCAGATGTTTCTCTAAAACTTTCCACA 1138
Query 946 GGCAATGAAGAAGAAGAAGAGAACATGAGAAA---CAACAATGAGAGGGAGCAATTGAAT 1002
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1139 GGCAATGAAGAAGAAGAAGAGAACATGAGAAATAACAACAATGAGAGGGAGCAAATGAAT 1198
Query 1003 TGGTGGAGCAATGGAGGGAACCACCACAA---TATGGGAGGACCATTAGCTGAGGCTTTG 1059
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1199 TGGTGGAGCAATGGAGGGAATCACCACAACAATATGGGAGGACCATTAGCTGAGGCTTTG 1258
Query 1060 AGGTCAGCTTCTTCGACGTCTAGTGTTCTTCATCAGATGGGAATCTCAACTCAAG 1114
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1259 AGGTCAGCTTCTTCGACGTCAAGTGTTCTTCATCAGATGGGAATCTCTACTCAAG 1313
> AT3G52905.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:19614007-19615745 REVERSE
LENGTH=742
Length=742
Score = 863 bits (467), Expect = 0.0
Identities = 501/518 (97%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 1112 AAGAAATGAAGTATGTGAAGCCATTGAGCTTATTGGGTAATGCGTTGAAGACAAAAGTAT 1171
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 90 AAGAAATGAAGTATGTGAAGCCATTGAGCTTATTGGGTAATGCGCTGAAGACCAAAGTGT 149
Query 1172 CAGTCCCTGGTCGGTTTCTGGGTTTAGATGTTGGTGATAAGTATGTTGGATTAGCTATCT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CAGTCCCTGGTCGGTTTCTGGGTTTAGATGTTGGTGATAAGTATGTTGGATTAGCTATCT 209
Query 1232 CAGATCCTTCAAATATGGTTGCTTCTCCATTGAGTGTTCTGCTCAGGAAGAAAACAAACA 1291
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 210 CAGATCCTTCAAATATGGTTGCTTCTCCATTGAGTGTTTTGCTCAGAAAGAAATCAAACA 269
Query 1292 TTGACTTGATGGCTACAGATTTTCAGAACCTGGTCAAAGCATTTTCTGTGTCGGGCTTAG 1351
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 270 TTGACCTGATGGCTACAGATTTCCAGAACCTGGTCAAAGCATTTTCTGTGTCGGGATTAG 329
Query 1352 TCGTTGGTTATCCATTTGGCAAACTGAACAATGTAGAGGATGTTGTCACTGTGAATCTTT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TCGTTGGTTATCCATTTGGCAAACTGAACAATGTAGAGGATGTTGTCACTGTGAATCTTT 389
Query 1412 TCATTGAGGAACTTCGTAAAACCGAAAAACTCAAGGATGTGAAATACACATATTGGGACG 1471
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCATTGAGGAACTTCGTAAGACCGAAAAACTCAAGGATGTGAAATACACATATTGGGACG 449
Query 1472 AGCGGTTATCATCAAAGACCGTTGAACTGATGCTGAAGCCCTTAAATTTGCATCCCGTTC 1531
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 450 AGCGATTATCATCAAAGACCGTTGAACTGATGTTGAAGCCCTTGAATTTGCATCCTGTTC 509
Query 1532 AAGAGAAGACAATGCTGGACAAGTTAGCCGCAGTAGTTATACTTCAGGAGTATCTAGATT 1591
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 510 AAGAGAAGACAATGTTGGACAAGTTAGCCGCAGTAGTTATACTTCAGGAGTATTTAGATT 569
Query 1592 ATGCGAACAGGTATGTAAACACTGAGCCAGCAGAGTAA 1629
| ||||||||||||||||||||||||||||||||||||
Sbjct 570 ACGCGAACAGGTATGTAAACACTGAGCCAGCAGAGTAA 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5