BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323836
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52920.1 | Symbols: | Family of unknown function (DUF662) ... 787 0.0
AT2G36410.1 | Symbols: | Family of unknown function (DUF662) ... 494 4e-139
> AT3G52920.1 | Symbols: | Family of unknown function (DUF662)
| chr3:19624343-19626247 FORWARD LENGTH=1067
Length=1067
Score = 787 bits (426), Expect = 0.0
Identities = 446/456 (98%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 1 ATGATGAGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGATGAGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCT 360
Query 61 GCTCTCTCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTCTCTCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGT 420
Query 121 GAAAGGGTTAAGGCTCAGCTTGGTCGTGTTGAGGAAGAGACTCGTCGTCTTGCTAGTATT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAAGGGTTAAGGCTCAGCTTGGTCGTGTTGAGGAAGAGACTCGTCGTCTTGCTAGTATC 480
Query 181 CGCGAGGAGCTTGAGACTATGGCAGATCCCATGAGGAAGGAAGTTAATTGGGTGCGTAAG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCGAGGAGCTTGAGACAATGGCAGATCCCATGAGGAAGGAAGTTAATTGGGTGCGTAAG 540
Query 241 AAGATTGATAGTGTCAACAAAGAACTTAAACCATTAGGCTCTACAGTTCAAAAGAAGGAA 300
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 541 AAGATTGATAGCGTCAACAAAGAACTCAAACCATTAGGCTCTACTGTTCAAAAGAAGGAA 600
Query 301 AGGGAATACAAAGAAGCATTGGATACATTCAACGAGAAGAACCGTGAGAAAGTTCAGCTG 360
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 601 AGGGAATACAAAGAAGCATTGGATACGTTCAACGAGAAGAATCGTGAGAAAGTTCAGCTG 660
Query 361 ATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAG 720
Query 421 AAGCTGGATGAGCTAAGCAAGAGCATAGAGACCGAG 456
||||||||||||||||||| ||||||||| || |||
Sbjct 721 AAGCTGGATGAGCTAAGCAGGAGCATAGACACAGAG 756
> AT2G36410.1 | Symbols: | Family of unknown function (DUF662)
| chr2:15278769-15280604 FORWARD LENGTH=1194
Length=1194
Score = 494 bits (267), Expect = 4e-139
Identities = 399/461 (87%), Gaps = 16/461 (3%)
Strand=Plus/Plus
Query 7 AGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCTGCTCTC 66
|||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||
Sbjct 408 AGCTTGAGTTTTAGTAGTCATATGTCGAGAGAAGACGAAGAGATGACTCGTTCTGCTCTT 467
Query 67 TCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGTGAAAGG 126
|| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 468 TCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAGGATGGAAGTTCGTGAACGG 527
Query 127 GT-TAAGGCTCAGCTT-GGTCGTGTTGAGGAAGAGACTC-GTCGTCT-TGCTAGTATTCG 182
| || ||||| || ||||| || || |||| || | ||||| | ||| ||||||
Sbjct 528 ATCCAA-GCTCA-ATTGGGTCGGGTCGAACAAGAAAC-CAAACGTCTCT-CTACTATTCG 583
Query 183 CGAGGAGCTTGAGACTATGGCAGATCCCATGAGGAAGGAAGTTAAT-TG-GGTGCGTAAG 240
|||||||||||| ||||||||||||| ||||||||||||||| | || ||| ||||||
Sbjct 584 TGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTT--TCTGTGGTTCGTAAG 641
Query 241 AAGATTGATAGTGTCAACAAAGAACTTAAACCAT-TAGGCTCTACAGTTCAAAAGAAGGA 299
|||||||||||||| ||||||||||| ||||| | |||| || || ||||||||||||||
Sbjct 642 AAGATTGATAGTGTTAACAAAGAACTCAAACC-TCTAGGTTCCACTGTTCAAAAGAAGGA 700
Query 300 AAGGGAATACAAAGAAGCA-TTGGATACATTCAACGAGAAGAACCGTGAGAAAGTTCAGC 358
||||||||||||||||||| ||| |||||||||||||||||||| | |||||||| ||||
Sbjct 701 AAGGGAATACAAAGAAGCACTTG-ATACATTCAACGAGAAGAACAGGGAGAAAGTACAGC 759
Query 359 TGATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGA 418
||||||| || || |||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 760 TGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAAGTTGAGGATGA 819
Query 419 AGAAGCTGGATGAGCTAAGCAAGAGCATAGAGACCGAGTGA 459
|||||||| ||||| |||||||||||||| |||| ||||
Sbjct 820 TTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGA 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5