BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323850

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53050.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL...   433    8e-121


> AT3G53050.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL 
lectin protein | chr3:19669084-19669774 FORWARD LENGTH=615
Length=615

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 298/327 (91%), Gaps = 11/327 (3%)
 Strand=Plus/Plus

Query  1    ATGGGAGATTCACAACATTGCCGTTGTCTTCATGGCTTTATTTTGCTTGTTGTTATGTTT  60
            ||||||||  | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGGGAGA--CTC-ACATTGCCGTTGTCTTCATGGCTTTATTTTGCTTGTTGTTCTGTTT  57

Query  61   CTTAT-C-TCTGTGTTTAGTTTAGCTTCAAAGATGGACGTTTCTTCTCACGGTGACCAGA  118
            ||| | | || ||||||||||| ||||||||||| |||||||||| |||||| ||| |||
Sbjct  58   CTT-TCCTTC-GTGTTTAGTTTCGCTTCAAAGATAGACGTTTCTTTTCACGGAGACGAGA  115

Query  119  AACGTAGTCTCTCTAGCTCCATTAATTCCTCTCTTAGCGAGTCCGTGGAATATACAATGT  178
            ||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||
Sbjct  116  AACGTAGTCTCTCTAGCTCCATTAATTCCTCTCTTAGTGAGTCAGCGGAATACACAATGT  175

Query  179  GCGCGAATCATAGGGAGGCTAAGGATGGTATAAACCAATCGCATTGGATTTTGATTGTGA  238
            |||||| |||||  ||||||||||||||  ||||||||||||||||||||| ||||| ||
Sbjct  176  GCGCGACTCATAAAGAGGCTAAGGATGG--TAAACCAATCGCATTGGATTTCGATTGCGA  233

Query  239  A-AGAGGATATGTTATTTCTAAGATCACTTACGCCGACTATGGCCAATCCACTGGTAGTT  297
            | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  234  ACA-AGGATATGTTATTTCAAAGATCACTTACGCCGACTATGGCCAATCCACTGGTAGTT  292

Query  298  GTGGGAAATTTAAACGCGGTAACTGCG  324
            |||||||||||||||||||||| ||||
Sbjct  293  GTGGGAAATTTAAACGCGGTAATTGCG  319


 Score =  200 bits (108),  Expect = 9e-51
 Identities = 113/115 (98%), Gaps = 2/115 (2%)
 Strand=Plus/Plus

Query  324  GAAATGTCTTAGGAAAGAGAAGTGTAAGTTGTTTGTTCCAGACAAGATTTTTGGTCCGAG  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  GAAATGTCTTAGGAAAGAGAAGTGTAAGTTGTTTGTTCCAGACAAGATTTTTGGTCCGAG  410

Query  384  CCACTGCAAGGGAGCTCTAAGTCTCGTTATTGACGCTACTTGTAGAAAAACTTAG  438
            |||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  411  CCACTGCAAGGGAGCT-TAAGTCTCGTTATTGACGCTACTTGTAGAAAA-CTTAG  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5