BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323856
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside trip... 2401 0.0
> AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:19687740-19690661
FORWARD LENGTH=1860
Length=1860
Score = 2401 bits (1300), Expect = 0.0
Identities = 1428/1491 (96%), Gaps = 3/1491 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGATACTGTAGAGAAAGTTCCCACC---GTTGAGTCATCTTCATCTTCCTCCGTT 57
||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 132 ATGGCGGATACGGTAGAGAAAGTTCCCACCGTTGTTGAGTCATCTTCATCATCCACCGTT 191
Query 58 GAAGCATCTATTAGCACCGAGAAGACTGAGCCCACGACGGAGAAGAAAAAGTGGGGCGAT 117
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GAAGCATCTAATAGCGCCGAGAAGACTGAGCCCACGACGGAGAAGAAAAAGTGGGGCGAT 251
Query 118 GTTGAGGATGATGATGATGAAGAAGAAGCAGTATCGGAGCTTAATTCTTTGAGCATTAAG 177
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 252 GTTGAAGATGATGATGATGAAGAAGAAGCTGTATCGGAGCTTAATTCATTGAGCATTAAG 311
Query 178 GAAGAAGAGAAACGTGATTCTGTGCTTGAGGAACCTGAAGATTCAAACATCAAAGCTGTT 237
||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 312 GAAGAAGAGAAACCTGATTCTATTCTTGAGGAACCTGAAGATTCTAACATCAAAGCTGTT 371
Query 238 ACTTCTGGTGACACACCATATACATCAGCAAGTAGATTTGAAGACTTGAACTTGTCACCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACTTCTGGTGACACACCATATACATCAGCAAGTAGATTTGAAGACTTGAACTTGTCACCT 431
Query 298 GAATTGATGAAAGGCTTGTATGTTGAGATGAAATTCGAAAAGCCGAGCAAGATCCAAGCA 357
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 432 GAATTGATGAAAGGCTTGTACGTTGAGATGAAATTCGAAAAGCCTAGCAAGATCCAAGCT 491
Query 358 ATCAGTTTGCCCATGATTATGACGCCGCCTCACAAGCATTTGATTGCTCAGGCGCATAAC 417
|| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||| ||||||
Sbjct 492 ATTAGTTTGCCTATGATAATGACGCCGCCACACAAGCATCTGATTGCCCAGGCTCATAAC 551
Query 418 GGATCTGGAAAGACGACTTGTTTCGTTCTTGGAATGTTGAGTCGGGTTGATCCGACACTG 477
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 552 GGATCTGGAAAGACGACTTGTTTCGTTCTTGGAATGTTGAGTCGTGTTGATCCCACATTG 611
Query 478 AGAGAACCTCAAGCGCTCTGTATTTGTCCCACTAGAGAATTAGCTAATCAGAATATGGAA 537
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AGAGAGCCTCAAGCTCTCTGTATTTGTCCCACTAGAGAATTAGCTAATCAGAATATGGAA 671
Query 538 GTTCTTCAGAAGATGGGGAAGTATACTGGGATCACTGCTGAGTTGGCTGTGCCAGAGTCA 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 672 GTTCTTCAGAAGATGGGGAAGTTTACTGGGATCACTGCTGAGTTGGCTGTGCCTGACTCA 731
Query 598 ACGAGAGGCGCATCACCGGCCCCAAGACGAGCTCCTGTTTCTGCTCATGTTGTGATTGGT 657
|||||||| ||| | |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 732 ACGAGAGGTGCACCGGCGGCAACAAGAGGAGCTCCTGTTTCTGCTCATGTTGTGATTGGC 791
Query 658 ACCCCTGGAACGCTTAAGAAGTGGATGGCTTTTAAGAAACTAGGTCTAAATCATTTGAAG 717
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 792 ACCCCTGGAACGCTTAAGAAATGGATGGCATTTAAGAGACTAGGTCTAAATCATTTGAAG 851
Query 718 ATTCTTGTTTTTGATGAGGCTGACCATATGCTTGCTACGGATGGCTTTAGGGATGATTCC 777
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 852 ATTCTGGTTTTTGATGAGGCTGACCATATGCTTGCTACGGATGGGTTTAGGGATGATTCC 911
Query 778 TTGAAGATAATGAAAGACATTGGGAGAGTTAATCCCAATTTCCAGGTTCTTCTTTTCTCG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TTGAAGATAATGAAAGACATTGGGAGAGTTAATCCCAATTTCCAGGTTCTTCTTTTCTCG 971
Query 838 GCAACTTTTAACGAAATTGTCAAAGATTTTGTTGCAAGGACAGTCAAAGATCCCAACCAA 897
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 972 GCAACTTTTAACGAAACTGTCAAAGATTTTGTTGCGCGGACAGTCAAAGATCCCAACCAA 1031
Query 898 TTGTTTGTCAAAAGAGAGGATCTGGCTTTGGACTCAGTGAAGCAGTATAAAGTTGTTTGC 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1032 TTGTTTGTCAAAAGAGAGGATCTGGCTTTGGACTCGGTGAAGCAGTATAAAGTTGTTTGC 1091
Query 958 CCAAAGGAGCAAAACAAGATCGAAGTCATCAAGGATCAGATTATGGAGCTTGGTGATATT 1017
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1092 CCGAAGGAGCAAAACAAGATCGAAGTCATCAAGGATCAGATTATGGAGCTTGGGGATATT 1151
Query 1018 GGGCAAACCATTATCTTTGTGAAAACAAAAGCGTCTGCTCACAAGGTACACAAAGCCCTT 1077
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1152 GGGCAAACCATTATCTTTGTGAAAACAAAAGCGTCTGCTCAAAAGGTGCACAAAGCCCTT 1211
Query 1078 GCGGAAATGGGATATGACGTTACCAGTGTCCATGGTAATCTGTCTGAATCGGACAGGGAT 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1212 GCGGAAATGGGATATGACGTTACCAGTGTCCATGGTAATCTGACTGAATCGGACAGGGAT 1271
Query 1138 AAGATAGTTAAAGAGTTTAAAGATTGCCTTACTCAAGTGCTCATTGCTACCGATGTCATT 1197
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1272 AAGATAGTTAAAGAGTTTAAAGAATGCCTTACTCAAGTGCTCATTGCTACCGATGTCATT 1331
Query 1198 GCAAGAGGTTTTGACCAACAGCGGGTGAATTTGGTTGTCAATTATAATCTTCCCACTAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GCAAGAGGTTTTGACCAACAGCGGGTGAATTTGGTTGTCAATTATAATCTTCCCACTAAA 1391
Query 1258 TATGACACCGGAGAGCCAGATTATGAGGTGTACCTTCACAGGGTTGGGAGAGCTGGCCGG 1317
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 TATGAAACTGGAGAGCCAGATTATGAGGTGTACCTTCACAGGGTTGGGAGAGCTGGCCGG 1451
Query 1318 TTTGGTCGTAAAGGAGCGGTATTCAACTTGCTGCTTGATGATGGCTGGGATAAAGAGGTG 1377
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TTTGGTCGCAAAGGAGCGGTTTTCAACTTGCTGCTTGATGATGGCTGGGATAAAGAGGTG 1511
Query 1378 ATGGAGAAGATCGAGAAGTATTTTGAAGCAAATGTTAAGGAGATCAAGTCTTGGAACTCA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1512 ATGGAGAAGATCGAGAAGTATTTTGAAGCAAATGTTAAGGAGATCAAGTCGTGGAACTCA 1571
Query 1438 GAGGAAGAGTATAAGAGTGCATTAAAGGAAGCTGGCCTGCTCAACGAGTGA 1488
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1572 GAGGAAGAGTATAAGAGTGCATTAAAGGAAGCTGGCCTGCTGGACGAGTGA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5