BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323872
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53270.1 | Symbols: | Small nuclear RNA activating complex ... 1242 0.0
> AT3G53270.1 | Symbols: | Small nuclear RNA activating complex
(SNAPc), subunit SNAP43 protein | chr3:19750047-19753155 REVERSE
LENGTH=1473
Length=1473
Score = 1242 bits (672), Expect = 0.0
Identities = 790/847 (93%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTCATAGACGAGTTTGTGGAGGGT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 272 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTGATAGACGAGTTTGTGGAGGAT 331
Query 61 GATTTGACAACGTATGCTGATATGAAGAGCGTGTGGCAATCCCGAAAGTTTTCTTATATA 120
||||||||||| | ||||||||||||||| || |||| ||| ||||||||||| |||||
Sbjct 332 GATTTGACAACCTTTGCTGATATGAAGAGTGTCTGGCTATCTAGAAAGTTTTCTCATATA 391
Query 121 TATGATGCTAGTCCTAACAGCAACTTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 180
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 392 TATGAAGCTAGTCCTAACAGCAACCTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 451
Query 181 ATCGGTAACATGGTTAGTATTGATTCCTTTTCACGGAGACTTGGAGGTCTCTACTGTCTC 240
|| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 452 ATTGGTCACATGGTTAGTATTGATTCTTTTTCACGGAGACTTGGAGGTCTTTACTGTCTC 511
Query 241 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATTTATATCTCACTTCAA 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATCTATATCTCACTTCAA 571
Query 301 GAGCTCGGGAAATTTAGGGACCTTGTAGTTGAGGCAAAAGATAAAAGTGTAGAGATAGCT 360
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 572 GAGCTTGGGAAATTTAGGGATCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGCT 631
Query 361 GCTGCTGTGGCAAAACAAATGCTTGATAAGAACATGTTTATCTTTGGAGCTGTAGAGGAA 420
||||||||||||||| ||||||||||| |||||||||| || ||||||||||| || | |
Sbjct 632 GCTGCTGTGGCAAAAAAAATGCTTGATGAGAACATGTTAATATTTGGAGCTGTGGATG-A 690
Query 421 G-CTTGTGCAACCAGGA-AAGTTAATCAATTAACAGAGCTACAGAACGCACGTGTGCGGT 478
| | | |||||||| || || || |||||||||| |||||||||||||||||||||||||
Sbjct 691 GACATCTGCAACCAAGACAA-TTCATCAATTAACCGAGCTACAGAACGCACGTGTGCGGT 749
Query 479 TTGCCTATGATAGGTTAATCTCTGACACTAGTATTGAGCAATTTATTCATTTGGATATGG 538
|||||||||| | |||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 750 TTGCCTATGAGAAGTTAATCTGTGACACTAGTATTAACCAATTTATTCATTTGGATATGG 809
Query 539 GTAAGGAAGTTAATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGA 598
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GTAAGGAAGTTGATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGA 869
Query 599 AGCGTGCAATTGAAGGTGCAGGAGAGATAATGGAGATTGAGGACATAAAGCACATATCAG 658
|||||||| | |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 870 AGCGTGCAGTCGAAGGTGCAGGAGAAATAATGGAGATTGATGACATAAAGCATATATCAG 929
Query 659 AAGAGAAAGAGTTGATGGGAGAAAGAATGGAGAAACTGAAAGAGGAATGGGATTCACAAA 718
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 930 AAGAGAAAGAGTTGATGGGAGAGAGAATGGAGAAATTGAAAGAGGAATGGGATTCACAAA 989
Query 719 GACTTT-CATTTTATGAACAAACCAAGCTTGATGGTCTTACTACGACACCGGAACTGTTG 777
|||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 990 GACTTTAC-TTTTATGAACAAACCAAGCTTGATGGTTTTACTACGACACCAAAACAGTTG 1048
Query 778 A-AAGATGTGGAACATGATGAAGACGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCA 836
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1049 ACAA-ATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCA 1107
Query 837 AAGCTAG 843
|||||||
Sbjct 1108 AAGCTAG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5