BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323881
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53370.1 | Symbols: | S1FA-like DNA-binding protein | chr3:... 399 4e-111
> AT3G53370.1 | Symbols: | S1FA-like DNA-binding protein | chr3:19787894-19788843
REVERSE LENGTH=602
Length=602
Score = 399 bits (216), Expect = 4e-111
Identities = 226/231 (98%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1 ATGGACGGTGACGATTTTGCCGGAAAGGCGGCTGCTGAAGCCAAAGGATTGAACCCGGGA 60
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 107 ATGGACGGCGAAGATTTTGCCGGAAAGGCGGCTGCTGAAGCCAAGGGATTGAACCCGGGA 166
Query 61 TTAATCGTGCTGCTTGTTGTTGGAGGTCCGCTTCTTGTGTTCCTAATCGCCAACTACGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTAATCGTGCTGCTTGTTGTTGGAGGTCCGCTTCTTGTGTTCCTAATCGCCAACTACGTG 226
Query 121 CTTTACGTGTATGCTCAGAAGAACCTACCTCCAAGGAAGAAGAAGCCCGTTTCCAAAAAG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTTTACGTTTATGCTCAGAAGAACCTACCTCCAAGGAAGAAGAAGCCCGTTTCCAAAAAG 286
Query 181 AAGCTCAAGCGGGAGAAGCTCAAGCAAGGAGTCCCTGTCCCTGGAGAATAA 231
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 287 AAGCTCAAGCGGGAGAAGCTAAAGCAAGGAGTCCCTGTCCCTGGAGAATAA 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5